Variant report
Variant | esv19158 |
---|---|
Chromosome Location | chr10:92087717-92088311 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:92079088..92081474-chr10:92085377..92088671,3 | MCF-7 | breast: |
No data |
No data |
No data |
No data |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs557565949 | chr10:92087730-92087731 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs550364064 | chr10:92087763-92087764 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs577608801 | chr10:92087803-92087804 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs79156842 | chr10:92087809-92087810 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs537053357 | chr10:92087810-92087811 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs192709526 | chr10:92087853-92087854 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs573227378 | chr10:92087857-92087858 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs558971699 | chr10:92087896-92087897 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs577260316 | chr10:92087911-92087912 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs146785087 | chr10:92087915-92087916 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs183829915 | chr10:92087970-92087971 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs573413115 | chr10:92088027-92088028 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs542327101 | chr10:92088081-92088082 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs368880610 | chr10:92088105-92088106 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs12268694 | chr10:92088126-92088127 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
16 | rs149019960 | chr10:92088145-92088146 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs545326193 | chr10:92088150-92088151 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs565174903 | chr10:92088166-92088167 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs143807644 | chr10:92088191-92088192 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs541446617 | chr10:92088272-92088273 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs151099629 | chr10:92088278-92088279 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Gastric cancer | 17908304 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Melanoma | 18172304 | CNVD |
Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Acute lymphoblastic leukemia | 20724749 | CNVD |
Autism | 22495311 | CNVD |
Prostate cancer | 18632612 | CNVD |
Cockayne syndrome | 18421352 | CNVD |
Glioblastoma | 16823260 | CNVD |
Medulloblastoma | 16968546 | CNVD |
Neuroblastoma | 17533364 | CNVD |
Squamous cell cancer | 21044232 | CNVD |
Glioma | 21971842 | CNVD |
Cancer | 21637783 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Liposarcoma | 21253554 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Lung cancer | 18438408 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Usher syndrome | 20538994 | CNVD |
Medulloblastoma | 16783165 | CNVD |
Breast cancer | 21785460 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Prostate cancer | 16573809 | CNVD |
Paraganglioma | 17535989 | CNVD |
Submicroscopic aberration syndrome | 21292638 | CNVD |
Gastrointestinal stromal cancer | 17535989 | CNVD |
Pancreatic endocrine tumor | 17639061 | CNVD |
Pulmonary chondroma | 17535989 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Colorectal cancer | 18645599 | CNVD |
Polyposis syndrome | 18645599 | CNVD |
Prostate cancer | 17245344 | CNVD |
Glioblastoma multiforme | 17369134 | CNVD |
Glioblastoma multiforme | 21750150 | CNVD |
Breast cancer | 22032731 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Glioblastoma multiforme | 17002787 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 17603634 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Breast cancer | 21364760 | CNVD |
T-cell acute lymphoblastic leukemia | 19406988 | CNVD |
High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
Wilms tumour | 21544195 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Esophageal adenocarcinoma | 18519675 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Neurocytoma | 17123091 | CNVD |
Prostate cancer | 16461572 | CNVD |
Basal-like breast cancer | 18066063 | CNVD |
Effusion lymphoma | 18079361 | CNVD |
Lung cancer | 21911935 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Prostate cancer | 21088497 | CNVD |
Breast cancer | 22048815 | CNVD |
Cutaneous T-cell lymphoma | 21881587 | CNVD |
Glioblastoma multiforme | 22291905 | CNVD |
Glioblastoma multiforme | 19435819 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Intracranial ependymoma | 16609018 | CNVD |
Breast cancer | 16397240 | CNVD |
Chronic lymphocytic leukemia | 21049055 | CNVD |
Cervical cancer | 21062161 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Melanoma | 24453001 | CNVD |
Breast cancer | 16608533 | CNVD |
Sezary syndrome | 18413736 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:92086800-92092200 | Weak transcription | Aorta | Aorta |
2 | chr10:92087200-92088200 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |