Variant report
| Variant | esv19436 |
|---|---|
| Chromosome Location | chr10:25905114-25905885 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs560222856 | chr10:25905126-25905127 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs535054396 | chr10:25905143-25905144 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs563846307 | chr10:25905147-25905148 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs185425779 | chr10:25905230-25905231 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs578261274 | chr10:25905231-25905232 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs537727944 | chr10:25905238-25905239 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs370085929 | chr10:25905261-25905262 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs12771005 | chr10:25905283-25905284 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 9 | rs12763829 | chr10:25905323-25905324 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 10 | rs7477188 | chr10:25905340-25905341 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs372522231 | chr10:25905343-25905344 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs75018917 | chr10:25905379-25905380 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs190674648 | chr10:25905380-25905381 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs140249040 | chr10:25905402-25905403 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs563181827 | chr10:25905412-25905413 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs12765442 | chr10:25905421-25905422 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 17 | rs552073588 | chr10:25905422-25905423 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs570416411 | chr10:25905552-25905553 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs559854980 | chr10:25905568-25905569 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs564530881 | chr10:25905580-25905581 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs11596434 | chr10:25905644-25905645 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs530723666 | chr10:25905651-25905652 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs2001385 | chr10:25905668-25905669 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 24 | rs2095456 | chr10:25905674-25905675 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 25 | rs868692 | chr10:25905810-25905811 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 26 | rs573363343 | chr10:25905833-25905834 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs868691 | chr10:25905876-25905877 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
Variant related diseases (count:42)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Behavioral abnormalities | 21522184 | CNVD |
| Dysmorphic features | 21522184 | CNVD |
| low-grade B-cell lymphoma tumor | 18367492 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Autism | 21439084 | CNVD |
| Maculopathy | 20981449 | CNVD |
| Ovine squamous-cell carcinoma | 17599052 | CNVD |
| T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| Breast cancer | 22522925 | CNVD |
| Glioblastoma multiforme | 21525872 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:25904600-25906000 | Enhancers | Skeletal Muscle Male | skeletal muscle |
| 2 | chr10:25904800-25905200 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 3 | chr10:25904800-25905200 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 4 | chr10:25904800-25906200 | Enhancers | Skeletal Muscle Female | skeletal muscle |
