Variant report

Variant	esv19622
Chromosome Location	chr10:93305214-93361590
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:89)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:89 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr10:93305011..93307032-chr10:93308259..93311194,2	K562	blood:
2	chr10:93057890..93058410-chr10:93311655..93312281,2	K562	blood:
3	chr10:93312245..93313115-chr10:93387596..93388162,3	MCF-7	breast:
4	chr10:93327358..93329492-chr10:93329757..93331419,2	MCF-7	breast:
5	chr10:93343792..93345929-chr10:93347595..93350391,2	MCF-7	breast:
6	chr10:93336246..93341378-chr10:93343790..93348157,8	K562	blood:
7	chr10:93350580..93353004-chr10:93359204..93360922,2	K562	blood:
8	chr10:93305011..93307032-chr10:93308259..93311194,2	K562	blood:
9	chr10:93315882..93318453-chr10:93320289..93322933,2	MCF-7	breast:
10	chr10:93346595..93350402-chr10:93367133..93369211,4	K562	blood:
11	chr10:93346562..93349330-chr10:93365146..93366773,2	K562	blood:
12	chr10:93349778..93351711-chr10:93371480..93373317,2	K562	blood:
13	chr10:93317213..93320903-chr10:93391428..93394572,3	MCF-7	breast:
14	chr10:93347598..93350963-chr10:93361481..93364970,4	K562	blood:
15	chr10:93320690..93322917-chr10:93329298..93330979,2	K562	blood:
16	chr10:93346543..93348493-chr10:93350509..93352475,2	K562	blood:
17	chr10:93345296..93347976-chr10:93501392..93503311,2	K562	blood:
18	chr10:93353150..93355778-chr10:93356212..93359175,2	K562	blood:
19	chr10:93311259..93312202-chr10:93394865..93395816,4	K562	blood:
20	chr10:93317021..93319231-chr10:93366500..93369129,2	MCF-7	breast:
21	chr10:93357183..93358744-chr10:93360434..93363194,2	MCF-7	breast:
22	chr10:93343830..93345636-chr10:93394100..93396852,2	K562	blood:
23	chr10:93253136..93254014-chr10:93311415..93312189,3	MCF-7	breast:
24	chr10:93309981..93319603-chr10:93387875..93394075,18	MCF-7	breast:
25	chr10:93357183..93358744-chr10:93360434..93363194,2	MCF-7	breast:
26	chr10:93311487..93312272-chr10:93504776..93505607,2	MCF-7	breast:
27	chr10:93310787..93313296-chr10:93313678..93315496,2	K562	blood:
28	chr10:93337791..93340748-chr10:93344667..93347663,2	K562	blood:
29	chr10:93348105..93349991-chr10:93353710..93355230,2	MCF-7	breast:
30	chr10:93309163..93311774-chr10:93314390..93315926,2	MCF-7	breast:
31	chr10:93348105..93349991-chr10:93353710..93355230,2	MCF-7	breast:
32	chr10:93337791..93340748-chr10:93344667..93347663,2	K562	blood:
33	chr10:93332183..93336360-chr10:93344097..93346879,3	K562	blood:
34	chr10:92639868..92640796-chr10:93311331..93312227,2	MCF-7	breast:
35	chr10:93342049..93343770-chr10:93347072..93349314,2	K562	blood:
36	chr10:93309163..93311774-chr10:93314390..93315926,2	MCF-7	breast:
37	chr10:93325816..93328522-chr10:93329853..93331382,2	MCF-7	breast:
38	chr10:93311883..93312872-chr10:93393286..93394075,2	MCF-7	breast:
39	chr10:93347896..93349521-chr10:93352949..93355020,2	K562	blood:
40	chr10:93336246..93341378-chr10:93343790..93348157,8	K562	blood:
41	chr10:93057747..93058550-chr10:93311188..93311789,2	MCF-7	breast:
42	chr10:93057770..93058312-chr10:93311725..93312552,2	MCF-7	breast:
43	chr10:93325037..93327659-chr10:93375294..93378275,2	K562	blood:
44	chr10:93311514..93312203-chr10:93392449..93393186,2	MCF-7	breast:
45	chr10:93343792..93345929-chr10:93347595..93350391,2	MCF-7	breast:
46	chr10:93353150..93355778-chr10:93356212..93359175,2	K562	blood:
47	chr10:75757594..75758345-chr10:93348053..93349045,2	Hela-S3	cervix:
48	chr10:93338295..93340668-chr10:93348531..93350800,2	MCF-7	breast:
49	chr10:93349706..93352465-chr10:93354064..93358504,5	K562	blood:
50	chr10:93347950..93349480-chr10:93389392..93391120,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HECTD2-1	chr10:93335036-93335057	XLOC_008562
2	lnc-HECTD2-1	chr10:93340293-93340512	XLOC_008562
3	lnc-PPP1R3C-3	chr10:93324782-93324910	ucscGeneNc_uc001khj_2
4	lnc-PPP1R3C-2	chr10:93334802-93334930	NONHSAT015628

No data

Variant related genes	Relation type
ENSG00000170889	chromatin interactions
ENSG00000272817	chromatin interactions
ENSG00000180581	chromatin interactions
ENSG00000119938	chromatin interactions
ENSG00000035403	chromatin interactions
ENSG00000222305	chromatin interactions
ENSG00000165338	chromatin interactions
ENSG00000174721	chromatin interactions
YWHAE	miRNA target sites
PTPRK	miRNA target sites

Extended variants
information (count: 2023 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:2023 , 50 per page) page: 1 2 3 4 5 6 7 ... 41

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10881919	chr10:93305226-93305227	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs564450556	chr10:93305379-93305380	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs532779848	chr10:93305410-93305411	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs11813035	chr10:93305443-93305444	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs565825474	chr10:93305474-93305475	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs141955243	chr10:93305488-93305489	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs147286414	chr10:93305492-93305493	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs557908745	chr10:93305493-93305494	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs114240506	chr10:93305520-93305521	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs192177465	chr10:93305522-93305523	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs571950051	chr10:93305553-93305554	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs534235820	chr10:93305619-93305620	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs554090783	chr10:93305629-93305630	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs574095743	chr10:93305653-93305654	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs184253674	chr10:93305714-93305715	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs113779014	chr10:93305731-93305732	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs2149826	chr10:93305803-93305804	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs140411997	chr10:93305849-93305850	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs544433900	chr10:93305854-93305855	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs370721453	chr10:93305900-93305901	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs564134792	chr10:93305959-93305960	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs114793506	chr10:93306112-93306113	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs567354080	chr10:93306228-93306229	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs188388617	chr10:93306229-93306230	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs192669547	chr10:93306287-93306288	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs537612620	chr10:93306387-93306388	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs528892115	chr10:93306433-93306434	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs184705584	chr10:93306464-93306465	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs144295694	chr10:93306504-93306505	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs12255223	chr10:93306511-93306512	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs551912310	chr10:93306563-93306564	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs112300712	chr10:93306590-93306591	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs571752930	chr10:93306615-93306616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs527961367	chr10:93306653-93306654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs12255293	chr10:93306666-93306667	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs12255294	chr10:93306671-93306672	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs536690332	chr10:93306673-93306674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs375195931	chr10:93306690-93306691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs556683494	chr10:93306706-93306707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs539509211	chr10:93306714-93306715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs149869556	chr10:93306738-93306739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs557905774	chr10:93306808-93306809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs577777017	chr10:93306822-93306823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs540505996	chr10:93306882-93306883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs553679556	chr10:93306959-93306960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs4933661	chr10:93306966-93306967	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs367585654	chr10:93307022-93307023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs572962168	chr10:93307037-93307038	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs79283755	chr10:93307052-93307053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs4933662	chr10:93307072-93307073	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD

Chromatin state (count:1042 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93296200-93312200	Weak transcription	Psoas Muscle	Psoas
2	chr10:93297000-93311400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:93297000-93311400	Weak transcription	Left Ventricle	heart
4	chr10:93299400-93311400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:93300000-93306600	Enhancers	Fetal Lung	lung
6	chr10:93301000-93314800	Weak transcription	Aorta	Aorta
7	chr10:93302400-93311400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:93302600-93308000	Weak transcription	Fetal Brain Male	brain
9	chr10:93302600-93312000	Weak transcription	NHLF	lung
10	chr10:93302800-93305400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr10:93302800-93307800	Weak transcription	Hela-S3	cervix
12	chr10:93304800-93305400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:93304800-93308200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:93305200-93305400	Enhancers	Fetal Heart	heart
15	chr10:93305200-93306400	Enhancers	Pancreas	Pancrea
16	chr10:93305400-93305800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:93305800-93311400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr10:93306400-93312200	Weak transcription	Pancreas	Pancrea
19	chr10:93306600-93308000	Weak transcription	Fetal Lung	lung
20	chr10:93307600-93308000	Enhancers	K562	blood
21	chr10:93307800-93308000	Enhancers	Hela-S3	cervix
22	chr10:93308000-93308600	Enhancers	Fetal Lung	lung
23	chr10:93308000-93308800	Enhancers	Fetal Brain Male	brain
24	chr10:93308000-93309000	Weak transcription	Hela-S3	cervix
25	chr10:93308000-93311600	Weak transcription	K562	blood
26	chr10:93308200-93310200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr10:93308600-93311000	Weak transcription	Fetal Lung	lung
28	chr10:93308600-93312200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr10:93309000-93310400	Enhancers	Hela-S3	cervix
30	chr10:93309800-93310000	Enhancers	Stomach Mucosa	stomach
31	chr10:93309800-93311800	Enhancers	Liver	Liver
32	chr10:93310000-93311400	Weak transcription	Stomach Mucosa	stomach
33	chr10:93310200-93311400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr10:93310400-93311400	Weak transcription	Hela-S3	cervix
35	chr10:93311000-93311600	Enhancers	Fetal Lung	lung
36	chr10:93311200-93311400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:93311400-93311600	Enhancers	Brain Anterior Caudate	brain
38	chr10:93311400-93311600	Enhancers	NHDF-Ad	bronchial
39	chr10:93311400-93311800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:93311400-93311800	Enhancers	Brain Cingulate Gyrus	brain
41	chr10:93311400-93311800	Enhancers	Brain Substantia Nigra	brain
42	chr10:93311400-93311800	Enhancers	Fetal Heart	heart
43	chr10:93311400-93311800	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr10:93311400-93311800	Enhancers	Stomach Smooth Muscle	stomach
45	chr10:93311400-93312200	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr10:93311400-93312200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:93311400-93312200	Enhancers	Left Ventricle	heart
48	chr10:93311400-93312400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:93311400-93312600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:93311400-93312800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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