Variant report

Variant	esv1975015
Chromosome Location	chr6:1745446-1745823
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FOXC1-8	chr6:1743077-1746752	NONHSAT106545

Extended variants
information (count: 15 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs577721966	chr6:1745467-1745468	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
2	rs566310393	chr6:1745486-1745487	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
3	rs148930634	chr6:1745522-1745523	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
4	rs557030658	chr6:1745565-1745566	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
5	rs376998777	chr6:1745579-1745580	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
6	rs377670303	chr6:1745598-1745599	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
7	rs564297453	chr6:1745600-1745601	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
8	rs369548004	chr6:1745615-1745616	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
9	rs56175720	chr6:1745636-1745637	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
10	rs9501767	chr6:1745651-1745652	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
11	rs59546481	chr6:1745659-1745660	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
12	rs3839587	chr6:1745670-1745671	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
13	rs181118745	chr6:1745723-1745724	Weak transcription Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
14	rs73427306	chr6:1745763-1745764	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs73716369	chr6:1745791-1745792	Weak transcription Enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:71)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Prader-willi syndrome	20588305	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Developmental delay	19490664	CNVD
Cancer	21183584	CNVD
Multiple Epiphyseal Dysplasia	20877625	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Glaucoma	18694899	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	17603634	CNVD
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Lung cancer	18438408	CNVD
Bladder cancer	21909424	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Cancer	20164919	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
small cell lung cancer	20016488	CNVD
Autism	22495311	CNVD
Autism	21448237	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:1701200-1749400	Weak transcription	Colonic Mucosa	Colon
2	chr6:1716000-1749200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:1721200-1746200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:1721200-1748800	Weak transcription	Osteobl	bone
5	chr6:1726800-1749000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:1726800-1749000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:1731800-1746200	Weak transcription	Right Atrium	heart
8	chr6:1732200-1750600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:1732200-1756600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:1736000-1746200	Weak transcription	Esophagus	oesophagus
11	chr6:1736000-1746200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:1736400-1746200	Weak transcription	Right Ventricle	heart
13	chr6:1737000-1749000	Weak transcription	Stomach Mucosa	stomach
14	chr6:1737400-1746200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:1738400-1745800	Weak transcription	Fetal Kidney	kidney
16	chr6:1738400-1746200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:1738400-1762400	Weak transcription	Gastric	stomach
18	chr6:1738400-1768200	Weak transcription	Primary T cells from cord blood	blood
19	chr6:1739400-1746000	Weak transcription	HUVEC	blood vessel
20	chr6:1739600-1746000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:1741400-1746200	Weak transcription	Lung	lung
22	chr6:1741600-1746200	Weak transcription	GM12878-XiMat	blood
23	chr6:1741800-1746200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:1743200-1750800	Weak transcription	Fetal Intestine Small	intestine
25	chr6:1743200-1756400	Weak transcription	HepG2	liver
26	chr6:1745200-1746200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:1745200-1746200	Weak transcription	Spleen	Spleen
28	chr6:1745200-1746600	Enhancers	Brain Hippocampus Middle	brain
29	chr6:1745200-1749400	Weak transcription	Pancreas	Pancrea
30	chr6:1745400-1749000	Weak transcription	Aorta	Aorta
31	chr6:1745800-1746000	Enhancers	Brain Germinal Matrix	brain
32	chr6:1745800-1746000	Enhancers	Brain Substantia Nigra	brain
33	chr6:1745800-1746000	Enhancers	Fetal Kidney	kidney
34	chr6:1745800-1746400	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr6:1745800-1751000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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