Variant report

Variant	esv19865
Chromosome Location	chr6:82176187-82177524
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:81951165..81951953-chr6:82175557..82176202,3	MCF-7	breast:
2	chr6:82174222..82177213-chr6:82462255..82464769,2	MCF-7	breast:
3	chr6:81452134..81452854-chr6:82175477..82176222,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112773	chromatin interactions

Extended variants
information (count: 44 )
Associated
traits (count: 103 )

Variant overlapped rSNPs/rCNVs (count:44 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs541275623	chr6:82176207-82176208	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs569438629	chr6:82176225-82176226	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs558710610	chr6:82176233-82176234	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs559398335	chr6:82176257-82176258	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs11277746	chr6:82176269-82176270	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs577925314	chr6:82176290-82176291	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs533297977	chr6:82176295-82176296	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs189212496	chr6:82176296-82176297	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs563477170	chr6:82176325-82176326	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs6900044	chr6:82176420-82176421	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs182257387	chr6:82176470-82176471	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs186510241	chr6:82176472-82176473	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs528742530	chr6:82176503-82176504	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs188995099	chr6:82176528-82176529	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs202044923	chr6:82176550-82176551	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs549303737	chr6:82176559-82176560	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs538827881	chr6:82176569-82176570	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs113300998	chr6:82176590-82176591	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs199648709	chr6:82176619-82176620	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs565454200	chr6:82176632-82176633	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs567605743	chr6:82176641-82176642	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs559110507	chr6:82176647-82176648	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs534805935	chr6:82176684-82176685	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs553240741	chr6:82176690-82176691	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs571289134	chr6:82176706-82176707	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs181717893	chr6:82176707-82176708	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs567338891	chr6:82176725-82176726	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs536354035	chr6:82176733-82176734	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs546532643	chr6:82176774-82176775	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs566388721	chr6:82176817-82176818	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs538380303	chr6:82176840-82176841	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs558609237	chr6:82176843-82176844	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs72893576	chr6:82176886-82176887	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs537617293	chr6:82176919-82176920	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs554366024	chr6:82176940-82176941	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs573751237	chr6:82176956-82176957	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs76936175	chr6:82176980-82176981	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs559695645	chr6:82176983-82176984	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs72893578	chr6:82176987-82176988	Inactive region	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs150036812	chr6:82176988-82176989	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs538417105	chr6:82176996-82176997	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs542256633	chr6:82177079-82177080	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs145345655	chr6:82177140-82177141	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs185677255	chr6:82177163-82177164	Inactive region	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:103)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Acute lymphoblastic leukemia	17640729	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	20164919	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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