Variant report

Variant	esv1990109
Chromosome Location	chr9:105594044-105594496
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs567763858	chr9:105594049-105594050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs149991899	chr9:105594053-105594054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs151316460	chr9:105594061-105594062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs190793138	chr9:105594062-105594063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs10990354	chr9:105594118-105594119	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs35375885	chr9:105594144-105594145	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs200408805	chr9:105594145-105594146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs557787208	chr9:105594149-105594150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs571382889	chr9:105594150-105594151	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs77806114	chr9:105594166-105594167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs77056319	chr9:105594168-105594169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs150953743	chr9:105594195-105594196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs145008813	chr9:105594218-105594219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs369921824	chr9:105594227-105594228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs538985092	chr9:105594232-105594233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs553961010	chr9:105594234-105594235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs373287938	chr9:105594242-105594243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs559184823	chr9:105594248-105594249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs146713145	chr9:105594257-105594258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs370092455	chr9:105594258-105594259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs572577152	chr9:105594263-105594264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs145292328	chr9:105594272-105594273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs372613163	chr9:105594273-105594274	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs374831154	chr9:105594287-105594288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs144368776	chr9:105594291-105594292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs2492378	chr9:105594293-105594294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs201639564	chr9:105594302-105594303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs541635774	chr9:105594310-105594311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs13300477	chr9:105594317-105594318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs2417398	chr9:105594323-105594324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs182668043	chr9:105594324-105594325	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs185713487	chr9:105594340-105594341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs13286512	chr9:105594350-105594351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs16922210	chr9:105594399-105594400	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
35	rs543498913	chr9:105594407-105594408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs563321123	chr9:105594418-105594419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs76266034	chr9:105594420-105594421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs556315729	chr9:105594430-105594431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs2812597	chr9:105594453-105594454	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Fukuyama congenital muscular dystrophy	21572526	CNVD
Testicular germ cell tumor	18059402	CNVD
Mantle cell lymphoma	19029149	CNVD
Intracranial aneurysm	16715129	CNVD
Breast cancer	21364760	CNVD
Developmental delay	21147756	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:105591600-105603200	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links