The 2.0 version of rSNPBase

Variant report

Variant esv1990978
Chromosome Location chr2:55915139-55915140
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:55846800-55919800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr2:55858200-55920400 Weak transcription Fetal Heart heart
3 chr2:55864400-55919600 Weak transcription NHLF lung
4 chr2:55866600-55920000 Weak transcription ES-WA7 Cell Line embryonic stem cell
5 chr2:55870400-55920000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr2:55870600-55920000 Weak transcription Rectal Smooth Muscle rectum
7 chr2:55870800-55920400 Weak transcription Aorta Aorta
8 chr2:55871000-55920000 Weak transcription Spleen Spleen
9 chr2:55873200-55919800 Weak transcription Small Intestine intestine
10 chr2:55874800-55920200 Weak transcription Pancreas Pancrea
11 chr2:55879000-55917600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
12 chr2:55883000-55919800 Weak transcription HSMMtube muscle
13 chr2:55889800-55918400 Strong transcription Primary hematopoietic stem cells short term culture blood
14 chr2:55890200-55915600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr2:55892400-55919800 Weak transcription Primary neutrophils fromperipheralblood blood
16 chr2:55892600-55917000 Strong transcription Dnd41 blood
17 chr2:55893200-55915800 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr2:55894000-55919800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr2:55895800-55920000 Weak transcription Right Ventricle heart
20 chr2:55901200-55915200 Strong transcription GM12878-XiMat blood
21 chr2:55901800-55916000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
22 chr2:55902000-55915200 Strong transcription Primary T helper cells fromperipheralblood blood
23 chr2:55902000-55916000 Strong transcription HUES48 Cell Line embryonic stem cell
24 chr2:55903200-55915800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
25 chr2:55903600-55915800 Strong transcription Breast Myoepithelial Primary Cells Breast
26 chr2:55904200-55916400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
27 chr2:55904200-55920600 Weak transcription Stomach Mucosa stomach
28 chr2:55904600-55920200 Weak transcription Gastric stomach
29 chr2:55905000-55915600 Strong transcription Primary T regulatory cells fromperipheralblood blood
30 chr2:55905200-55916000 Strong transcription Liver Liver
31 chr2:55906800-55915800 Strong transcription Fetal Muscle Leg muscle
32 chr2:55907200-55915800 Strong transcription Primary mononuclear cells fromperipheralblood Blood
33 chr2:55907400-55920000 Weak transcription Fetal Kidney kidney
34 chr2:55907600-55919800 Weak transcription NHDF-Ad bronchial
35 chr2:55907800-55919800 Weak transcription iPS-15b Cell Line embryonic stem cell
36 chr2:55908400-55915200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
37 chr2:55908600-55919800 Weak transcription ES-I3 Cell Line embryonic stem cell
38 chr2:55909200-55920200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr2:55910000-55919800 Weak transcription Skeletal Muscle Male skeletal muscle
40 chr2:55910000-55920000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr2:55910000-55920000 Weak transcription Esophagus oesophagus
42 chr2:55910200-55916000 Strong transcription NHEK skin
43 chr2:55910200-55919800 Weak transcription Thymus Thymus
44 chr2:55910400-55919800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr2:55910400-55920200 Weak transcription Left Ventricle heart
46 chr2:55910600-55919800 Weak transcription Colonic Mucosa Colon
47 chr2:55910600-55919800 Weak transcription Fetal Brain Male brain
48 chr2:55910600-55920000 Weak transcription Lung lung
49 chr2:55910600-55920200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
50 chr2:55910800-55916400 Strong transcription A549 lung

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Last update: Aug 31, 2015