Variant report
Variant | esv2034781 |
---|---|
Chromosome Location | chr18:11918328-11918904 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No data |
No data |
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-MPPE1-1 | chr18:11918850-11918913 | XLOC_012771 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000267079 | TF binding region |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs544579941 | chr18:11918350-11918351 | Enhancers Active TSS Weak transcription | TF binding region | 1 gene(s) | Overlapped CNVs | n/a |
2 | rs561278027 | chr18:11918375-11918376 | Enhancers Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs5026079 | chr18:11918376-11918377 | Enhancers Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs531383112 | chr18:11918406-11918407 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs543636514 | chr18:11918411-11918412 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs562934888 | chr18:11918412-11918413 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs9949804 | chr18:11918421-11918422 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
8 | rs375101481 | chr18:11918422-11918423 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs530617414 | chr18:11918454-11918455 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs551751265 | chr18:11918457-11918458 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs369087177 | chr18:11918479-11918480 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs193268081 | chr18:11918484-11918485 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs527725345 | chr18:11918493-11918494 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs549410946 | chr18:11918494-11918495 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs567980859 | chr18:11918499-11918500 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs538042335 | chr18:11918500-11918501 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs561063396 | chr18:11918508-11918509 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs528240309 | chr18:11918555-11918556 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs185669764 | chr18:11918556-11918557 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs188097705 | chr18:11918557-11918558 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs376188959 | chr18:11918563-11918564 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs8093661 | chr18:11918599-11918600 | Enhancers Flanking Active TSS Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
23 | rs553311429 | chr18:11918603-11918604 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs181001047 | chr18:11918632-11918633 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs185461392 | chr18:11918661-11918662 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs141051111 | chr18:11918714-11918715 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs368013986 | chr18:11918741-11918742 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs374155810 | chr18:11918749-11918750 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs2848453 | chr18:11918750-11918751 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs543223171 | chr18:11918773-11918774 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs565074529 | chr18:11918804-11918805 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs9962430 | chr18:11918865-11918866 | Enhancers Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
33 | rs188569385 | chr18:11918867-11918868 | Enhancers Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
34 | rs545507060 | chr18:11918882-11918883 | Enhancers Weak transcription | lncRNA | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Chronic lymphocytic leukemia | 21546498 | CNVD |
Intellectual disability | 22102821 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Seminomas | 18059402 | CNVD |
Chronic lymphocytic leukemia | 18922857 | CNVD |
Kartagener syndrome | 16639409 | CNVD |
Basal cell lymphoma | 21115979 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Cancer | 21183584 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Melanoma | 18172304 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Colorectal cancer | 19150955 | CNVD |
Follicular lymphoma | 20505157 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Cancer | 21637783 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Trisomy 18 syndrome | 17576883 | CNVD |
Autism | 20808228 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Barrett''s syndrome | 19417022 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Multiple myeloma | 17550852 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Breast cancer | 21364760 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Heart disease | 21282601 | CNVD |
Glioblastoma multiforme | 21922591 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Acute myeloid leukemia | 17377590 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Developmental delay | 21147756 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 16620391 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Retinoblastoma | 21504564 | CNVD |
Glioma | 17123091 | CNVD |
Neurodevelopmental disorder | 22521361 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr18:11913800-11920400 | Enhancers | Primary monocytes fromperipheralblood | blood |
2 | chr18:11916800-11918600 | Weak transcription | Primary B cells from cord blood | blood |
3 | chr18:11917400-11921600 | Weak transcription | K562 | blood |
4 | chr18:11917800-11921400 | Weak transcription | GM12878-XiMat | blood |
5 | chr18:11918000-11918400 | Active TSS | Primary neutrophils fromperipheralblood | blood |
6 | chr18:11918200-11918600 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
7 | chr18:11918400-11918600 | Flanking Active TSS | Primary neutrophils fromperipheralblood | blood |
8 | chr18:11918600-11918800 | Enhancers | Primary B cells from cord blood | blood |
9 | chr18:11918600-11920200 | Enhancers | Monocytes-CD14+_RO01746 | blood |
10 | chr18:11918600-11920400 | Enhancers | Primary neutrophils fromperipheralblood | blood |
11 | chr18:11918800-11919600 | Weak transcription | Primary B cells from cord blood | blood |