Variant report

Variant	esv20418
Chromosome Location	chr1:152277700-152279580
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 205 )
Associated
traits (count: 121 )

Variant overlapped rSNPs/rCNVs (count:205 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200240824	chr1:152277704-152277705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs9436066	chr1:152277717-152277718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs568623988	chr1:152277720-152277721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs537641542	chr1:152277731-152277732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs201718564	chr1:152277733-152277734	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs571141981	chr1:152277734-152277735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs539474413	chr1:152277739-152277740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs138096455	chr1:152277742-152277743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs71625194	chr1:152277752-152277753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs200794975	chr1:152277753-152277754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs143183339	chr1:152277769-152277770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs375627425	chr1:152277780-152277781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs148283211	chr1:152277781-152277782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs79921407	chr1:152277790-152277791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs146288788	chr1:152277794-152277795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs142839051	chr1:152277797-152277798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs199599634	chr1:152277798-152277799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs535902302	chr1:152277801-152277802	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs200710151	chr1:152277803-152277804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs140128903	chr1:152277808-152277809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs201156410	chr1:152277816-152277817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs144792381	chr1:152277820-152277821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs555274375	chr1:152277821-152277822	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs3126069	chr1:152277822-152277823	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs2065957	chr1:152277826-152277827	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs139489857	chr1:152277838-152277839	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs74925349	chr1:152277842-152277843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs577488038	chr1:152277845-152277846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs139778751	chr1:152277847-152277848	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs202013256	chr1:152277861-152277862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs145566935	chr1:152277865-152277866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs528985626	chr1:152277866-152277867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs71625197	chr1:152277872-152277873	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs145597576	chr1:152277884-152277885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs542756481	chr1:152277904-152277905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs148315024	chr1:152277905-152277906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs531165708	chr1:152277910-152277911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs551170840	chr1:152277929-152277930	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs144075951	chr1:152277933-152277934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs139449805	chr1:152277934-152277935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs369194638	chr1:152277964-152277965	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs111864260	chr1:152277982-152277983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs372986218	chr1:152277986-152277987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs147564475	chr1:152277991-152277992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs546685516	chr1:152278007-152278008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs371838177	chr1:152278018-152278019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs374209488	chr1:152278020-152278021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs267598029	chr1:152278027-152278028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs200815866	chr1:152278047-152278048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs2065958	chr1:152278049-152278050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:121)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Cancer	21129771	CNVD
Non-small cell lung cancer	21385341	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Ewing''s sarcoma	21437220	CNVD
Liposarcoma	21253554	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Breast cancer	20409316	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Cervical cancer	21062161	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	21183584	CNVD
Multiple myeloma	16461302	CNVD
Lung cancer	18438408	CNVD
Rett syndrome	21593744	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Systemic lupus erythematosus	21956041	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Non-small cell lung cancer	21829676	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	17899364	CNVD
Bladder cancer	19088036	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21611746	CNVD
Retinoblastoma	19183342	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Ewing''s sarcoma	17952124	CNVD
Osteosarcoma	17242211	CNVD
Ovarian cancer	17242211	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Schizophrenia	18990708	CNVD
Sudden cardiac death	19188705	CNVD
Plasma-cell dyscrasia	16705089	CNVD
Myeloma	17024118	CNVD
Cancer	17060936	CNVD
Multiple myeloma	16616336	CNVD
Type 2 diabetes	19141583	CNVD
Chordoma	18071362	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Urothelial carcinoma	21177765	CNVD
Burkitt''s lymphoma	19759907	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Follicular lymphoma	18703704	CNVD
Breast cancer	21509527	CNVD
Bladder cancer	21909424	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Myelofibrosis	22110671	CNVD
Liver carcinoma	19366792	CNVD
Testicular germ cell tumor	18059402	CNVD
Trisomy 5 syndrome	21098271	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Gastrointestinal cancer	16790693	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Glioblastoma multiforme	21138945	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Atopic	22158606	CNVD

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152274000-152283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:152274200-152279600	Weak transcription	Fetal Lung	lung
3	chr1:152274200-152281400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr1:152276000-152279600	Weak transcription	Pancreas	Pancrea
5	chr1:152276000-152279800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:152276600-152280400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr1:152277000-152279600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:152277600-152279600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:152277600-152280600	Weak transcription	Esophagus	oesophagus
10	chr1:152277600-152282400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr1:152277600-152283600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:152278200-152288000	Weak transcription	Right Ventricle	heart
13	chr1:152278800-152281800	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links