Variant report

Variant	esv20694
Chromosome Location	chr10:91643009-91644203
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11185920	chr10:91643012-91643013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs10785914	chr10:91643014-91643015	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs541654819	chr10:91643054-91643055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs561520019	chr10:91643066-91643067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs61869846	chr10:91643073-91643074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs563339988	chr10:91643091-91643092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs183774611	chr10:91643095-91643096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs530441280	chr10:91643112-91643113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs10881703	chr10:91643122-91643123	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
10	rs11185921	chr10:91643137-91643138	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs115855244	chr10:91643146-91643147	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs10785915	chr10:91643148-91643149	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs571016778	chr10:91643170-91643171	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs144033952	chr10:91643174-91643175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs187319299	chr10:91643217-91643218	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs139646583	chr10:91643257-91643258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs567187490	chr10:91643277-91643278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs144276180	chr10:91643284-91643285	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs1359380	chr10:91643308-91643309	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
20	rs1359379	chr10:91643332-91643333	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs7084582	chr10:91643343-91643344	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs11185922	chr10:91643350-91643351	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs572576044	chr10:91643352-91643353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs191754445	chr10:91643358-91643359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs541612284	chr10:91643390-91643391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs374458702	chr10:91643431-91643432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs146555039	chr10:91643432-91643433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs530404189	chr10:91643474-91643475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs374252184	chr10:91643493-91643494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs1359378	chr10:91643519-91643520	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs562503861	chr10:91643526-91643527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs1359377	chr10:91643553-91643554	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs376255365	chr10:91643582-91643583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs551358097	chr10:91643587-91643588	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs564608426	chr10:91643602-91643603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs1324705	chr10:91643607-91643608	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs548526893	chr10:91643687-91643688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs568340805	chr10:91643709-91643710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs10881704	chr10:91643736-91643737	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
40	rs536544650	chr10:91643781-91643782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs115273648	chr10:91643788-91643789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs1324704	chr10:91643815-91643816	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs374529012	chr10:91643857-91643858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs28506928	chr10:91643866-91643867	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs572539276	chr10:91643868-91643869	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs535158749	chr10:91643871-91643872	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs10785916	chr10:91644027-91644028	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
48	rs183886252	chr10:91644080-91644081	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs1924710	chr10:91644120-91644121	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs117603407	chr10:91644145-91644146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91642600-91664200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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