Variant report

Variant	esv2086527
Chromosome Location	chr10:91003350-91003351
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91001026..91003568-chr10:91009679..91012651,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107798	chromatin interactions

Extended variants
information (count: 1 )
Associated
traits (count: 88 )

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs5786865	chr10:91003350-91003351	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:88)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90977400-91010400	Weak transcription	Fetal Thymus	thymus
2	chr10:90977400-91010800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr10:90977600-91008800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:90977600-91009400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:90977600-91010400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr10:90977600-91010800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:90979400-91003600	Strong transcription	Primary T cells from cord blood	blood
8	chr10:90985200-91010600	Weak transcription	Thymus	Thymus
9	chr10:90987400-91010800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:90987600-91010800	Weak transcription	Pancreas	Pancrea
11	chr10:90987800-91010600	Weak transcription	HSMM	muscle
12	chr10:90988000-91010600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:90994800-91010800	Weak transcription	Esophagus	oesophagus
14	chr10:90998600-91004200	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr10:90999000-91004200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr10:90999600-91005400	Weak transcription	Brain Angular Gyrus	brain
17	chr10:90999600-91010400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:90999800-91010000	Weak transcription	Dnd41	blood
19	chr10:90999800-91010400	Weak transcription	Colon Smooth Muscle	Colon
20	chr10:90999800-91010400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:90999800-91010600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr10:90999800-91010600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr10:90999800-91010800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:90999800-91010800	Weak transcription	Ovary	ovary
25	chr10:91000000-91004800	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr10:91000000-91010400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr10:91000000-91010600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr10:91000200-91010600	Weak transcription	Brain Germinal Matrix	brain
29	chr10:91000200-91010600	Weak transcription	Fetal Brain Female	brain
30	chr10:91000400-91003600	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr10:91000600-91010400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr10:91000600-91010800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr10:91000800-91003600	Enhancers	H9 Cell Line	embryonic stem cell
34	chr10:91000800-91004200	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr10:91001000-91003600	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr10:91001000-91003800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:91001000-91010600	Weak transcription	Fetal Stomach	stomach
38	chr10:91001000-91010600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr10:91001200-91006400	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr10:91001200-91009400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr10:91001200-91010600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr10:91001200-91010800	Weak transcription	Lung	lung
43	chr10:91001400-91003600	Flanking Active TSS	GM12878-XiMat	blood
44	chr10:91001400-91003600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr10:91001400-91003800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr10:91001400-91004000	Weak transcription	Brain Hippocampus Middle	brain
47	chr10:91001400-91004400	Enhancers	Primary B cells from peripheral blood	blood
48	chr10:91001400-91004400	Enhancers	Primary hematopoietic stem cells	blood
49	chr10:91001600-91004400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:91001600-91004400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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