Variant report

Variant	esv21366
Chromosome Location	chr15:78066105-78068080
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77951783..77952314-chr15:78066187..78066759,2	MCF-7	breast:
2	chr15:78066595..78068537-chr15:78076215..78077798,2	K562	blood:
3	chr15:77925491..77927003-chr15:78065547..78066951,12	MCF-7	breast:
4	chr15:78062199..78064857-chr15:78066773..78068430,2	K562	blood:
5	chr15:78059582..78063718-chr15:78064964..78067132,3	K562	blood:

Variant related genes	Relation type
ENSG00000169783	chromatin interactions

Extended variants
information (count: 86 )
Associated
traits (count: 51 )

Variant overlapped rSNPs/rCNVs (count:86 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs552459257	chr15:78066122-78066123	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs570751140	chr15:78066146-78066147	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs4404036	chr15:78066210-78066211	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs546256516	chr15:78066246-78066247	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs76175174	chr15:78066266-78066267	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs535169875	chr15:78066287-78066288	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs117443446	chr15:78066320-78066321	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs149465249	chr15:78066374-78066375	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs55665482	chr15:78066376-78066377	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs577495833	chr15:78066407-78066408	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs11633721	chr15:78066408-78066409	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs577098671	chr15:78066442-78066443	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs528703381	chr15:78066471-78066472	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs370560760	chr15:78066472-78066473	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs370871654	chr15:78066538-78066539	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs114855495	chr15:78066581-78066582	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs182170900	chr15:78066599-78066600	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs541911798	chr15:78066608-78066609	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs145935277	chr15:78066622-78066623	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs548535540	chr15:78066652-78066653	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs74025776	chr15:78066674-78066675	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs376073648	chr15:78066717-78066718	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs139888337	chr15:78066719-78066720	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs528360694	chr15:78066749-78066750	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs546592039	chr15:78066768-78066769	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs567937210	chr15:78066780-78066781	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs535540355	chr15:78066793-78066794	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs562192355	chr15:78066822-78066823	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs550223366	chr15:78066860-78066861	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs116171820	chr15:78066879-78066880	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs530955195	chr15:78066899-78066900	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs537273828	chr15:78066906-78066907	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs558707538	chr15:78066915-78066916	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs186449741	chr15:78066920-78066921	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs28433323	chr15:78066964-78066965	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs534977806	chr15:78067034-78067035	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs143266805	chr15:78067046-78067047	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs574702276	chr15:78067071-78067072	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs550552982	chr15:78067109-78067110	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs375865392	chr15:78067123-78067124	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs542196994	chr15:78067124-78067125	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs202026220	chr15:78067126-78067127	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs200922674	chr15:78067131-78067132	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs201521780	chr15:78067134-78067135	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs557538545	chr15:78067199-78067200	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs4886907	chr15:78067274-78067275	Active TSS Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs4886525	chr15:78067275-78067276	Active TSS Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs564239751	chr15:78067278-78067279	Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs114500292	chr15:78067279-78067280	Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs540110907	chr15:78067298-78067299	Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:51)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78061800-78074800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:78062200-78068000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:78064600-78068600	Weak transcription	Spleen	Spleen
4	chr15:78065200-78066600	Strong transcription	Fetal Intestine Small	intestine
5	chr15:78065800-78066200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr15:78066400-78068200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:78066600-78072600	Weak transcription	Fetal Intestine Small	intestine
8	chr15:78067200-78068000	Enhancers	Fetal Brain Female	brain
9	chr15:78067200-78068200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:78067400-78067600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr15:78067600-78068000	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr15:78067600-78068600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr15:78068000-78068800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:78068000-78073000	Weak transcription	Fetal Brain Female	brain
15	chr15:78068000-78076400	Weak transcription	Brain Inferior Temporal Lobe	brain

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