Variant report

Variant	esv2140021
Chromosome Location	chr5:115038520-115038934
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs465437	chr5:115038523-115038524	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs552533381	chr5:115038561-115038562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs192735529	chr5:115038585-115038586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs183614494	chr5:115038622-115038623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs376504751	chr5:115038631-115038632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs548863252	chr5:115038643-115038644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs550438728	chr5:115038647-115038648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs188279212	chr5:115038651-115038652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs536268159	chr5:115038690-115038691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs147088691	chr5:115038701-115038702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs549773483	chr5:115038713-115038714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs569794537	chr5:115038714-115038715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs562683115	chr5:115038719-115038720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs59095437	chr5:115038737-115038738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs67855341	chr5:115038741-115038742	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs530894072	chr5:115038747-115038748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs528733371	chr5:115038773-115038774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs538712265	chr5:115038787-115038788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs201116710	chr5:115038789-115038790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs558512013	chr5:115038812-115038813	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs560411307	chr5:115038822-115038823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs202218773	chr5:115038827-115038828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs10629464	chr5:115038828-115038829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs2455452	chr5:115038840-115038841	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs116731657	chr5:115038899-115038900	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs138241866	chr5:115038905-115038906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
Colorectal cancer	16774939	CNVD
Colorectal cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Ovarian cancer	21720365	CNVD
Neurocytoma	17123091	CNVD
Salivary gland tumor	18059337	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	19377443	CNVD
Prostate cancer	16461572	CNVD
Myelofibrosis	22110671	CNVD
Sezary syndrome	18413736	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115036800-115041800	Weak transcription	Liver	Liver

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