Variant report
| Variant | esv2179332 |
|---|---|
| Chromosome Location | chr10:90527208-90527647 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs11202846 | chr10:90527233-90527234 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs577100403 | chr10:90527237-90527238 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs76158158 | chr10:90527247-90527248 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs76131711 | chr10:90527259-90527260 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs12247982 | chr10:90527273-90527274 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs184182808 | chr10:90527286-90527287 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs541574922 | chr10:90527300-90527301 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs373569485 | chr10:90527315-90527316 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs530522728 | chr10:90527316-90527317 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs544088638 | chr10:90527348-90527349 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs61646268 | chr10:90527435-90527436 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs544128883 | chr10:90527472-90527473 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs77477605 | chr10:90527475-90527476 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs17112679 | chr10:90527569-90527570 | Enhancers Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 15 | rs141355360 | chr10:90527584-90527585 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs12256354 | chr10:90527603-90527604 | Enhancers Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 17 | rs190080629 | chr10:90527618-90527619 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:88)
| Disease | PMID | Source |
|---|---|---|
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Cockayne syndrome | 18421352 | CNVD |
| Glioblastoma | 16823260 | CNVD |
| Medulloblastoma | 16968546 | CNVD |
| Neuroblastoma | 17533364 | CNVD |
| Squamous cell cancer | 21044232 | CNVD |
| Glioma | 21971842 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-small cell lung cancer | 21044232 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Colorectal cancer | 20709793 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Usher syndrome | 20538994 | CNVD |
| Medulloblastoma | 16783165 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Paraganglioma | 17535989 | CNVD |
| Submicroscopic aberration syndrome | 21292638 | CNVD |
| Gastrointestinal stromal cancer | 17535989 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Pulmonary chondroma | 17535989 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Colorectal cancer | 18645599 | CNVD |
| Polyposis syndrome | 18645599 | CNVD |
| Prostate cancer | 17245344 | CNVD |
| Glioblastoma multiforme | 17369134 | CNVD |
| Glioblastoma multiforme | 21750150 | CNVD |
| Breast cancer | 22032731 | CNVD |
| Ovarian cancer | 20844748 | CNVD |
| Glioblastoma multiforme | 17002787 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| low-grade B-cell lymphoma tumor | 18367492 | CNVD |
| Breast cancer | 21364760 | CNVD |
| T-cell acute lymphoblastic leukemia | 19406988 | CNVD |
| High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Cancer | 20164919 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Esophageal adenocarcinoma | 18519675 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Neurocytoma | 17123091 | CNVD |
| Prostate cancer | 16461572 | CNVD |
| Basal-like breast cancer | 18066063 | CNVD |
| Effusion lymphoma | 18079361 | CNVD |
| Prostate cancer | 21147910 | CNVD |
| Lung cancer | 21911935 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Prostate cancer | 21088497 | CNVD |
| Breast cancer | 22048815 | CNVD |
| Cutaneous T-cell lymphoma | 21881587 | CNVD |
| Glioblastoma multiforme | 22291905 | CNVD |
| Glioblastoma multiforme | 19435819 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| Intracranial ependymoma | 16609018 | CNVD |
| Breast cancer | 16397240 | CNVD |
| Chronic lymphocytic leukemia | 21049055 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Melanoma | 24453001 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Bipolar disorder | 19114987 | CNVD |
| Sezary syndrome | 18413736 | CNVD |
| Breast cancer | 22522925 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:90523600-90528000 | Weak transcription | Ovary | ovary |
| 2 | chr10:90523800-90527400 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
| 3 | chr10:90523800-90527800 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 4 | chr10:90526400-90528200 | Enhancers | Monocytes-CD14+_RO01746 | blood |
| 5 | chr10:90526600-90529800 | Weak transcription | Primary monocytes fromperipheralblood | blood |
| 6 | chr10:90526600-90530200 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
| 7 | chr10:90526800-90528800 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 8 | chr10:90527200-90527600 | Weak transcription | Liver | Liver |
| 9 | chr10:90527200-90527800 | Enhancers | Hela-S3 | cervix |
| 10 | chr10:90527400-90528200 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
| 11 | chr10:90527600-90528400 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
| 12 | chr10:90527600-90528600 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
| 13 | chr10:90527600-90529200 | Enhancers | Liver | Liver |
