Variant report

Variant	esv2199608
Chromosome Location	chr10:677502-677503
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:674481..678808-chr10:734028..737251,4	MCF-7	breast:
2	chr10:676250..679405-chr10:680596..683070,3	MCF-7	breast:
3	chr10:670049..672648-chr10:675180..678695,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151240	chromatin interactions

Extended variants
information (count: 1 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs578030573	chr10:677503-677504	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21858162	CNVD
Obesity	19966786	CNVD

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:667600-679200	Weak transcription	Gastric	stomach
2	chr10:669200-680000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:670600-679400	Weak transcription	Aorta	Aorta
4	chr10:671400-679400	Weak transcription	Fetal Lung	lung
5	chr10:671600-679200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:672000-680200	Strong transcription	Fetal Intestine Small	intestine
7	chr10:672000-700000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr10:672200-677600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr10:672200-679400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:672200-679400	Weak transcription	NH-A	brain
11	chr10:672200-679800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:672200-681200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:672200-683800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr10:672200-690600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:672400-679400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:672400-680000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:672600-679200	Weak transcription	Fetal Brain Male	brain
18	chr10:672600-681200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:672600-681400	Weak transcription	Placenta	Placenta
20	chr10:672600-682600	Weak transcription	Esophagus	oesophagus
21	chr10:672600-695800	Weak transcription	NHLF	lung
22	chr10:672800-679200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:672800-680000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:672800-683400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:673000-680000	Weak transcription	HSMMtube	muscle
26	chr10:673200-679400	Weak transcription	Right Atrium	heart
27	chr10:673600-687400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:674000-679400	Weak transcription	Fetal Heart	heart
29	chr10:674600-678800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr10:674600-682000	Weak transcription	Adipose Nuclei	Adipose
31	chr10:675600-678800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:675600-681400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:675800-678800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr10:675800-679200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:676000-678800	Weak transcription	Ovary	ovary
36	chr10:676000-679200	Weak transcription	Pancreas	Pancrea
37	chr10:676000-679200	Weak transcription	Spleen	Spleen
38	chr10:676000-680400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr10:676400-677600	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:676400-677600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:676800-678000	Weak transcription	Fetal Intestine Large	intestine
42	chr10:676800-678200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:676800-679400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:676800-680200	Weak transcription	Fetal Kidney	kidney
45	chr10:677000-678200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:677000-678200	Enhancers	Brain Anterior Caudate	brain
47	chr10:677000-678200	Enhancers	Brain Hippocampus Middle	brain
48	chr10:677000-678800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr10:677000-678800	Weak transcription	Brain Angular Gyrus	brain
50	chr10:677000-678800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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