Variant report

Variant	esv2218263
Chromosome Location	chr10:774831-775270
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11253372	chr10:774836-774837	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs11253373	chr10:774857-774858	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs61676808	chr10:774869-774870	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs529831012	chr10:774875-774876	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs546324625	chr10:774878-774879	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs191433399	chr10:774885-774886	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs538269298	chr10:774886-774887	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs558492687	chr10:774912-774913	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs145550620	chr10:774939-774940	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs12778931	chr10:774951-774952	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs183764160	chr10:774958-774959	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs11253374	chr10:774961-774962	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs554959642	chr10:774963-774964	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs575014868	chr10:774968-774969	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs12770125	chr10:774970-774971	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs12770126	chr10:774973-774974	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs12764269	chr10:774979-774980	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs192464072	chr10:774982-774983	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs542776426	chr10:774993-774994	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs149858827	chr10:774994-774995	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs145444406	chr10:774995-774996	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs140241602	chr10:775003-775004	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs56101928	chr10:775006-775007	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs185292280	chr10:775014-775015	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs561009122	chr10:775015-775016	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs577428869	chr10:775028-775029	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs529867258	chr10:775035-775036	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs546361457	chr10:775036-775037	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs200134658	chr10:775051-775052	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs2486590	chr10:775058-775059	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs532036826	chr10:775077-775078	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs11253375	chr10:775083-775084	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs568879395	chr10:775121-775122	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs537432346	chr10:775134-775135	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs574836374	chr10:775142-775143	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs548895661	chr10:775162-775163	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs568746004	chr10:775174-775175	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs534411899	chr10:775190-775191	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs376705659	chr10:775255-775256	Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs577420696	chr10:775262-775263	Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs386739770	chr10:775264-775265	Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs17293489	chr10:775265-775266	Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	21858162	CNVD
Obesity	19966786	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:773000-775200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:773400-775200	Weak transcription	Right Atrium	heart
3	chr10:774600-775400	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr10:774600-775600	Enhancers	Duodenum Mucosa	Duodenum
5	chr10:775200-775400	Strong transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links