Variant report

Variant	esv2339111
Chromosome Location	chr10:26864023-26864024
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200177981	chr10:26864023-26864024	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
abnormal development	18461090	CNVD

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26857600-26880200	Weak transcription	Adipose Nuclei	Adipose
2	chr10:26858400-26879400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:26860800-26881200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr10:26860800-26892600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr10:26861000-26864200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:26861000-26864200	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr10:26861000-26864200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:26861000-26874400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:26861000-26886600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr10:26861200-26872000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:26861200-26884400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:26861200-26884800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:26862000-26864600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:26862000-26864600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr10:26862200-26864400	Strong transcription	Primary T cells from cord blood	blood
16	chr10:26862400-26882400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr10:26862800-26864800	Enhancers	Primary B cells from peripheral blood	blood
18	chr10:26863000-26864200	Weak transcription	Fetal Thymus	thymus
19	chr10:26863000-26864400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr10:26863000-26867000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:26863000-26879200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr10:26863200-26864200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:26863200-26875200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr10:26863400-26864800	Enhancers	Primary B cells from cord blood	blood
25	chr10:26863600-26864400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr10:26863800-26864600	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr10:26863800-26865000	ZNF genes & repeats	Thymus	Thymus
28	chr10:26864000-26864400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links