Variant report
| Variant | esv2379788 |
|---|---|
| Chromosome Location | chr10:26608048-26608520 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:26605620..26608060-chr10:26623312..26625310,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs60153816 | chr10:26608080-26608081 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 2 | rs537558074 | chr10:26608086-26608087 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs557450736 | chr10:26608089-26608090 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs60579755 | chr10:26608109-26608110 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 5 | rs147149917 | chr10:26608130-26608131 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs552884382 | chr10:26608168-26608169 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs573127781 | chr10:26608225-26608226 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs183359463 | chr10:26608226-26608227 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs564563429 | chr10:26608232-26608233 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs376994556 | chr10:26608233-26608234 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs200885532 | chr10:26608249-26608250 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs574862167 | chr10:26608269-26608270 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs187700840 | chr10:26608295-26608296 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs560693641 | chr10:26608298-26608299 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs192547746 | chr10:26608325-26608326 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs529728808 | chr10:26608375-26608376 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs56850688 | chr10:26608376-26608377 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 18 | rs559667329 | chr10:26608395-26608396 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs528801745 | chr10:26608399-26608400 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs551752533 | chr10:26608429-26608430 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs185142586 | chr10:26608482-26608483 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs56271228 | chr10:26608489-26608490 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 23 | rs190072031 | chr10:26608501-26608502 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:42)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Behavioral abnormalities | 21522184 | CNVD |
| Dysmorphic features | 21522184 | CNVD |
| low-grade B-cell lymphoma tumor | 18367492 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Autism | 21439084 | CNVD |
| Maculopathy | 20981449 | CNVD |
| Ovine squamous-cell carcinoma | 17599052 | CNVD |
| T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Adrenocortical carcinoma | 18281524 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Breast cancer | 22522925 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:26607000-26608200 | Weak transcription | Pancreas | Pancrea |
| 2 | chr10:26608200-26609000 | Enhancers | Pancreas | Pancrea |
