The 2.0 version of rSNPBase

Variant report

Variant esv2405632
Chromosome Location chr1:112992375-112992376
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:112957600-112997600 Weak transcription Brain Anterior Caudate brain
2 chr1:112959800-112992800 Weak transcription Fetal Muscle Trunk muscle
3 chr1:112960000-112995200 Weak transcription Stomach Smooth Muscle stomach
4 chr1:112960000-112996800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr1:112961200-112995600 Weak transcription Brain Cingulate Gyrus brain
6 chr1:112965800-112996200 Weak transcription Placenta Placenta
7 chr1:112968600-112994800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr1:112968600-112995400 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr1:112968600-112995600 Weak transcription Colonic Mucosa Colon
10 chr1:112974000-112997000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
11 chr1:112976200-112994200 Weak transcription Psoas Muscle Psoas
12 chr1:112979600-112998600 Weak transcription Right Ventricle heart
13 chr1:112979600-112998600 Weak transcription Spleen Spleen
14 chr1:112981000-112997200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr1:112981400-113006000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr1:112981600-112999000 Weak transcription Brain Substantia Nigra brain
17 chr1:112981800-112996600 Weak transcription Liver Liver
18 chr1:112982000-112996800 Weak transcription Rectal Smooth Muscle rectum
19 chr1:112982000-112998800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr1:112982600-112998600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr1:112982800-112998800 Weak transcription Colon Smooth Muscle Colon
22 chr1:112984400-112995600 Weak transcription Fetal Kidney kidney
23 chr1:112986400-112998600 Weak transcription Aorta Aorta
24 chr1:112987800-112996800 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr1:112987800-112998600 Weak transcription Gastric stomach
26 chr1:112988000-112993600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr1:112988000-112994000 Weak transcription Fetal Intestine Small intestine
28 chr1:112988600-112995400 Weak transcription iPS-15b Cell Line embryonic stem cell
29 chr1:112988600-112998200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr1:112988600-113004200 Weak transcription Fetal Heart heart
31 chr1:112988800-112998200 Weak transcription H9 Cell Line embryonic stem cell
32 chr1:112988800-113008400 Weak transcription A549 lung
33 chr1:112989200-112993600 Weak transcription NHDF-Ad bronchial
34 chr1:112989400-112995200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr1:112989400-112995400 Weak transcription Lung lung
36 chr1:112989400-112998200 Weak transcription Skeletal Muscle Female skeletal muscle
37 chr1:112989400-112998800 Weak transcription GM12878-XiMat blood
38 chr1:112989400-112999200 Weak transcription Placenta Amnion Placenta Amnion
39 chr1:112989600-112992400 Weak transcription NHLF lung
40 chr1:112989600-112995400 Weak transcription Sigmoid Colon Sigmoid Colon
41 chr1:112989600-112995600 Weak transcription Small Intestine intestine
42 chr1:112989600-113004000 Weak transcription ES-WA7 Cell Line embryonic stem cell
43 chr1:112990000-112993800 Strong transcription Rectal Mucosa Donor 31 rectum
44 chr1:112990000-112996400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr1:112990000-113002800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
46 chr1:112990200-112993200 Strong transcription HSMM muscle
47 chr1:112990200-112993800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr1:112990200-112999000 Weak transcription HepG2 liver
49 chr1:112990400-112992800 Strong transcription HUVEC blood vessel
50 chr1:112990400-113001600 Strong transcription iPS-20b Cell Line embryonic stem cell

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Last update: Aug 31, 2015