Variant report
Variant | esv2422318 |
---|---|
Chromosome Location | chr22:16894543-17163688 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2208)
- CpG islands (count:1897)
- Chromatin interactive region (count:35)
- LncRNA region (count:67)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr22:17086114-17086516 | K562 | blood: | n/a | n/a |
2 | ARID3A | chr22:17083673-17085411 | K562 | blood: | n/a | n/a |
3 | ARID3A | chr22:17163603-17163795 | K562 | blood: | n/a | n/a |
4 | ARID3A | chr22:17104647-17104707 | K562 | blood: | n/a | n/a |
5 | ARID3A | chr22:17085680-17085825 | K562 | blood: | n/a | n/a |
6 | ARID3A | chr22:17067242-17067477 | K562 | blood: | n/a | n/a |
7 | ARID3A | chr22:17080316-17082667 | K562 | blood: | n/a | n/a |
8 | ARID3A | chr22:16953138-16953239 | K562 | blood: | n/a | n/a |
9 | ARID3A | chr22:17051643-17051804 | K562 | blood: | n/a | n/a |
10 | ARID3A | chr22:16912144-16912145 | K562 | blood: | n/a | n/a |
11 | ARID3A | chr22:17161347-17161711 | K562 | blood: | n/a | n/a |
12 | ARID3A | chr22:17088412-17088518 | K562 | blood: | n/a | n/a |
13 | ARID3A | chr22:17107175-17107287 | K562 | blood: | n/a | n/a |
14 | ARID3A | chr22:17035973-17035982 | K562 | blood: | n/a | n/a |
15 | ARID3A | chr22:17086771-17086774 | K562 | blood: | n/a | n/a |
16 | ARID3A | chr22:17105483-17105715 | K562 | blood: | n/a | n/a |
17 | ARID3A | chr22:17148841-17148845 | K562 | blood: | n/a | n/a |
18 | ARID3A | chr22:16924216-16924217 | K562 | blood: | n/a | n/a |
19 | ARID3A | chr22:17160688-17160822 | K562 | blood: | n/a | n/a |
20 | ARID3A | chr22:16950758-16950943 | K562 | blood: | n/a | n/a |
21 | ATF1 | chr22:16953162-16953167 | K562 | blood: | n/a | n/a |
22 | ATF1 | chr22:17135095-17135454 | K562 | blood: | n/a | n/a |
23 | ATF1 | chr22:16952471-16952703 | K562 | blood: | n/a | n/a |
24 | ATF1 | chr22:17080622-17080964 | K562 | blood: | n/a | n/a |
25 | ATF1 | chr22:17149870-17149871 | K562 | blood: | n/a | n/a |
26 | ATF1 | chr22:16994923-16995006 | K562 | blood: | n/a | n/a |
27 | ATF1 | chr22:17081356-17082555 | K562 | blood: | n/a | n/a |
28 | ATF1 | chr22:17138146-17138271 | K562 | blood: | n/a | n/a |
29 | ATF1 | chr22:17108309-17108391 | K562 | blood: | n/a | n/a |
30 | ATF1 | chr22:17084142-17084990 | K562 | blood: | n/a | n/a |
31 | ATF1 | chr22:17162381-17162517 | K562 | blood: | n/a | n/a |
32 | ATF1 | chr22:17067146-17067338 | K562 | blood: | n/a | n/a |
33 | ATF1 | chr22:17049413-17049668 | K562 | blood: | n/a | n/a |
34 | ATF1 | chr22:17139117-17139492 | K562 | blood: | n/a | n/a |
35 | ATF1 | chr22:16950592-16951044 | K562 | blood: | n/a | n/a |
36 | ATF1 | chr22:16916895-16916925 | K562 | blood: | n/a | n/a |
37 | ATF1 | chr22:17085761-17085797 | K562 | blood: | n/a | n/a |
38 | ATF1 | chr22:16951987-16952028 | K562 | blood: | n/a | n/a |
39 | ATF1 | chr22:17075053-17075253 | K562 | blood: | n/a | n/a |
40 | ATF1 | chr22:17131258-17131397 | K562 | blood: | n/a | n/a |
41 | ATF1 | chr22:17136424-17136607 | K562 | blood: | n/a | n/a |
42 | ATF1 | chr22:17150691-17150975 | K562 | blood: | n/a | n/a |
43 | ATF1 | chr22:17105533-17105547 | K562 | blood: | n/a | n/a |
44 | ATF1 | chr22:17150383-17150486 | K562 | blood: | n/a | n/a |
45 | ATF1 | chr22:17085298-17085349 | K562 | blood: | n/a | n/a |
46 | ATF1 | chr22:16998935-16998936 | K562 | blood: | n/a | n/a |
47 | ATF1 | chr22:17031177-17031349 | K562 | blood: | n/a | n/a |
48 | ATF1 | chr22:17162719-17162788 | K562 | blood: | n/a | n/a |
49 | ATF1 | chr22:17055528-17055727 | K562 | blood: | n/a | n/a |
50 | ATF3 | chr22:17081869-17082397 | K562 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr22:17000596-17000646 | SK-N-MC | brain: | n/a |
2 | chr22:17083412-17083462 | IMR90 | lung: | fetal |
3 | chr22:17001266-17001316 | ovcar-3 | ovarian: | n/a |
4 | chr22:17074849-17074899 | H1-hESC | embryonic stem cell: | embryo |
5 | chr22:17002291-17002341 | HL-60 | blood: | n/a |
6 | chr22:16998752-16998802 | PANC-1 | pancreas: | n/a |
7 | chr22:17000596-17000646 | SK-N-MC | brain: | n/a |
8 | chr22:17083412-17083462 | IMR90 | lung: | fetal |
9 | chr22:17001266-17001316 | ovcar-3 | ovarian: | n/a |
10 | chr22:17074849-17074899 | H1-hESC | embryonic stem cell: | embryo |
11 | chr22:17002291-17002341 | HL-60 | blood: | n/a |
12 | chr22:16998752-16998802 | PANC-1 | pancreas: | n/a |
13 | chr22:17082787-17082837 | HRE | kidney: | n/a |
14 | chr22:17002014-17002064 | HCT-116 | colon: | n/a |
15 | chr22:17081716-17081766 | MCF10A-Er-Src | breast: | n/a |
16 | chr22:17082772-17082822 | U87 | brain: | n/a |
17 | chr22:17002043-17002093 | HMEC | breast: | n/a |
18 | chr22:17093737-17093787 | PFSK-1 | brain: | n/a |
19 | chr22:17083563-17083613 | ProgFib | skin: | n/a |
20 | chr22:17001515-17001565 | HCF | heart: | n/a |
21 | chr22:17078353-17078403 | HNPCEpiC | eye: | n/a |
22 | chr22:17091223-17091273 | HCT-116 | colon: | n/a |
23 | chr22:17090862-17090912 | AG04450 | lung: | fetal |
24 | chr22:17083482-17083532 | PFSK-1 | brain: | n/a |
25 | chr22:17078353-17078403 | AG09309 | skin: | n/a |
26 | chr22:17081716-17081766 | HCPEpiC | choroid plexus: | n/a |
27 | chr22:17090586-17090636 | HCF | heart: | n/a |
28 | chr22:17000596-17000646 | NHDF-neo | bronchial: | n/a |
29 | chr22:17082770-17082820 | Hepatocyte | liver: | n/a |
30 | chr22:17075075-17075125 | HAEpiC | amniotic membrane: | n/a |
31 | chr22:17000596-17000646 | HRE | kidney: | n/a |
32 | chr22:17002014-17002064 | SK-N-SH_RA | brain: | n/a |
33 | chr22:17075075-17075125 | AG09309 | skin: | n/a |
34 | chr22:17083482-17083532 | T-47D | breast: | n/a |
35 | chr22:17082787-17082837 | BJ | skin: | n/a |
36 | chr22:16998752-16998802 | HEK293 | kidney: | embryo |
37 | chr22:17093737-17093787 | HCPEpiC | choroid plexus: | n/a |
38 | chr22:16998752-16998802 | CMK | blood: | n/a |
39 | chr22:17090862-17090912 | NH-A | brain: | n/a |
40 | chr22:17083727-17083777 | HEEpiC | esophagus: | n/a |
41 | chr22:17073884-17073934 | GM12878 | blood: | n/a |
42 | chr22:17083412-17083462 | Hepatocyte | liver: | n/a |
43 | chr22:17001266-17001316 | T-47D | breast: | n/a |
44 | chr22:17090136-17090186 | HCT-116 | colon: | n/a |
45 | chr22:17090918-17090968 | HPAEpiC | pulmonary alveolar: | n/a |
46 | chr22:17075075-17075125 | SKMC | muscle: | n/a |
47 | chr22:17083412-17083462 | GM12891 | blood: | n/a |
48 | chr22:17083412-17083462 | BJ | skin: | n/a |
49 | chr22:17087887-17087937 | SK-N-SH | brain: | n/a |
50 | chr22:17082770-17082820 | AG04449 | skin: | fetal |
(count:35 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr22:17082962..17084554-chr9:134023631..134026390,2 | K562 | blood: | |
2 | chr22:17072773..17077374-chr22:17079286..17083716,6 | K562 | blood: | |
3 | chr22:17075301..17077505-chr22:17080578..17084448,4 | K562 | blood: | |
4 | chr22:17071010..17072768-chr22:17080566..17082153,2 | K562 | blood: | |
5 | chr22:17071010..17072768-chr22:17080566..17082153,2 | K562 | blood: | |
6 | chr22:17082340..17084089-chr22:17130817..17132862,2 | K562 | blood: | |
7 | chr12:6111028..6112821-chr22:17161710..17163211,2 | MCF-7 | breast: | |
8 | chr18:12120897..12121609-chr22:17160804..17161481,3 | MCF-7 | breast: | |
9 | chr22:17075301..17077505-chr22:17080578..17084448,4 | K562 | blood: | |
10 | chr13:91999824..92001564-chr22:17082538..17085283,2 | K562 | blood: | |
11 | chr22:17066485..17068775-chr22:17071695..17075675,3 | K562 | blood: | |
12 | chr22:17082358..17084442-chr22:17159222..17161511,2 | K562 | blood: | |
13 | chr22:17081180..17083610-chr22:17135094..17137742,2 | K562 | blood: | |
14 | chr18:12120896..12121904-chr22:17160896..17161585,3 | K562 | blood: | |
15 | chr22:17081525..17084142-chr22:17085115..17087609,4 | K562 | blood: | |
16 | chr22:17085288..17087578-chr22:17090332..17092725,3 | K562 | blood: | |
17 | chr22:17095902..17098628-chr22:17101991..17105262,3 | K562 | blood: | |
18 | chr22:17065487..17068388-chr22:17081706..17083648,2 | K562 | blood: | |
19 | chr22:17082503..17084009-chr7:152131864..152134485,2 | MCF-7 | breast: | |
20 | chr22:17148262..17150911-chr22:17154538..17157063,2 | K562 | blood: | |
21 | chr13:92000064..92003448-chr22:17083783..17086149,3 | K562 | blood: | |
22 | chr22:17072773..17077374-chr22:17079286..17083716,6 | K562 | blood: | |
23 | chr22:17085288..17087578-chr22:17090332..17092725,3 | K562 | blood: | |
24 | chr22:17081348..17084089-chr22:17130904..17132862,2 | K562 | blood: | |
25 | chr22:17133315..17135058-chr22:17137810..17140795,2 | K562 | blood: | |
26 | chr22:17081979..17085295-chr22:17088435..17090157,4 | K562 | blood: | |
27 | chr13:91999362..92002277-chr22:17079739..17082156,2 | K562 | blood: | |
28 | chr20:52209610..52210588-chr22:17090415..17091184,2 | Hela-S3 | cervix: | |
29 | chr22:17081199..17083533-chr22:17104130..17106306,2 | K562 | blood: | |
30 | chr22:17082358..17084442-chr22:17159222..17161511,2 | K562 | blood: | |
31 | chr22:17089247..17092556-chr22:17095289..17098917,3 | K562 | blood: | |
32 | chr22:17082340..17084089-chr22:17130817..17132862,2 | K562 | blood: | |
33 | chr22:17090395..17091942-chr22:17092016..17096359,3 | K562 | blood: | |
34 | chr22:17082698..17084790-chr9:134149841..134152671,2 | K562 | blood: | |
35 | chr22:17040660..17041327-chr7:128392491..128392991,2 | MCF-7 | breast: |
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-CCT8L2-1 | chr22:17142366-17142445 | ENSG00000189295.8 |
2 | lnc-IL17RA-23 | chr22:16898526-16900734 | NONHSAT083121 |
3 | lnc-CCT8L2-1 | chr22:17134599-17134966 | NR_040115 |
4 | lnc-IL17RA-22 | chr22:16905250-16905937 | NONHSAT083122 |
5 | lnc-CCT8L2-1 | chr22:17152408-17152478 | NR_040115 |
6 | lnc-CCT8L2-1 | chr22:17140387-17140518 | ENSG00000189295.8 |
7 | lnc-CCT8L2-5 | chr22:16909690-16909904 | NONHSAT083123 |
8 | lnc-CCT8L2-1 | chr22:17151107-17151151 | ENSG00000189295.8 |
9 | lnc-CCT8L2-1 | chr22:17140748-17140859 | ENSG00000189295.8 |
10 | lnc-IL17RA-4 | chr22:17100942-17101050 | ENSG00000100181 |
11 | lnc-CCT8L2-1 | chr22:17156013-17156342 | ENSG00000189295.8 |
12 | lnc-CCT8L2-1 | chr22:17150352-17150510 | ENSG00000189295.8 |
13 | lnc-IL17RA-5 | chr22:17097060-17097236 | XLOC_014137 |
14 | lnc-IL17RA-4 | chr22:17134400-17134582 | ENSG00000100181 |
15 | lnc-IL17RA-22 | chr22:16906243-16906756 | NONHSAT083122 |
16 | lnc-CCT8L2-5 | chr22:16957442-16957613 | NONHSAT083123 |
17 | lnc-CCT8L2-5 | chr22:16919027-16919177 | NONHSAT083123 |
18 | lnc-CCT8L2-1 | chr22:17152408-17152478 | ENSG00000189295.8 |
19 | lnc-CCT8L2-5 | chr22:16940672-16940846 | NONHSAT083123 |
20 | lnc-CCT8L2-1 | chr22:17142366-17142445 | NR_040115 |
21 | lnc-CCT8L2-1 | chr22:17134956-17134966 | ENSG00000189295.8 |
22 | lnc-CCT8L2-1 | chr22:17158083-17158266 | ENSG00000189295.8 |
23 | lnc-IL17RA-21 | chr22:16956377-16956672 | expReg_chr22_183_+ |
24 | lnc-IL17RA-4 | chr22:17130820-17130851 | ENSG00000100181 |
25 | lnc-IL17RA-4 | chr22:17100507-17100610 | NONHSAT083142 |
26 | lnc-IL17RA-4 | chr22:17133212-17133373 | ENSG00000100181 |
27 | lnc-CCT8L2-1 | chr22:17160182-17160374 | ENSG00000189295.8 |
28 | lnc-CCT8L2-1 | chr22:17156013-17156430 | ENSG00000189295.8 |
29 | lnc-CCT8L2-5 | chr22:16914068-16914203 | NONHSAT083123 |
30 | lnc-CCT8L2-1 | chr22:17152345-17152478 | NONHSAT083150 |
31 | lnc-IL17RA-4 | chr22:17134400-17134580 | NONHSAT083142 |
32 | lnc-IL17RA-4 | chr22:17103731-17103787 | ENSG00000100181 |
33 | lnc-IL17RA-4 | chr22:17119469-17119630 | ENSG00000100181.17 |
34 | lnc-IL17RA-4 | chr22:17120188-17121627 | ENSG00000100181.17 |
35 | lnc-IL17RA-4 | chr22:17133823-17134695 | ENSG00000100181 |
36 | lnc-IL17RA-17 | chr22:17080310-17080839 | NONHSAT083129 |
37 | lnc-IL17RA-5 | chr22:17097636-17098004 | XLOC_014137 |
38 | lnc-CCT8L2-1 | chr22:17152408-17152478 | ENSG00000189295.8 |
39 | lnc-IL17RA-4 | chr22:17129417-17129538 | ENSG00000100181 |
40 | lnc-IL17RA-22 | chr22:16905970-16906213 | NONHSAT083122 |
41 | lnc-CCT8L2-1 | chr22:17154490-17154642 | NR_040115 |
42 | lnc-CCT8L2-1 | chr22:17140748-17140859 | NR_040115 |
43 | lnc-CCT8L2-5 | chr22:16920053-16920131 | NONHSAT083123 |
44 | lnc-IL17RA-4 | chr22:17119469-17119870 | ENSG00000100181.17 |
45 | lnc-IL17RA-4 | chr22:17128495-17128675 | ENSG00000100181 |
46 | lnc-CCT8L2-5 | chr22:16953593-16953719 | NONHSAT083123 |
47 | lnc-CCT8L2-1 | chr22:17150352-17150510 | NR_040115 |
48 | lnc-CCT8L2-1 | chr22:17154451-17154627 | ENSG00000189295.8 |
49 | lnc-IL17RA-4 | chr22:17117910-17117980 | ENSG00000100181.17 |
50 | lnc-IL17RA-4 | chr22:17119469-17119630 | ENSG00000100181 |
No data |
No data |
Variant related genes | Relation type |
---|---|
SLC25A15P5 | TF binding region |
KCNMB3P1 | TF binding region |
CCT8L2 | TF binding region |
CHEK2P4 | TF binding region |
SLC9B1P4 | TF binding region |
TPTEP1 | TF binding region |
PABPC1P9 | TF binding region |
PARP4P3 | TF binding region |
ENSG00000233995 | TF binding region |
ENSG00000221084 | TF binding region |
FABP5P11 | TF binding region |
ACTR3BP6 | TF binding region |
ENSG00000267338 | TF binding region |
ENSG00000273362 | TF binding region |
ANKRD62P1 | TF binding region |
ANKRD62P1-PARP4P3 | TF binding region |
SLC25A15P5 | CpG island |
KCNMB3P1 | CpG island |
CCT8L2 | CpG island |
CHEK2P4 | CpG island |
SLC9B1P4 | CpG island |
TPTEP1 | CpG island |
PABPC1P9 | CpG island |
PARP4P3 | CpG island |
ENSG00000233995 | CpG island |
ENSG00000221084 | CpG island |
FABP5P11 | CpG island |
ACTR3BP6 | CpG island |
ENSG00000267338 | CpG island |
ENSG00000273362 | CpG island |
ANKRD62P1 | CpG island |
ANKRD62P1-PARP4P3 | CpG island |
ENSG00000215417 | chromatin interactions |
ENSG00000055609 | chromatin interactions |
ENSG00000259271 | chromatin interactions |
ENSG00000240122 | chromatin interactions |
ENSG00000100181 | chromatin interactions |
ENSG00000221084 | chromatin interactions |
ENSG00000171940 | chromatin interactions |
ENSG00000267338 | chromatin interactions |
ENSG00000198445 | chromatin interactions |
ENSG00000241735 | chromatin interactions |
ENSG00000249263 | chromatin interactions |
ENSG00000126882 | chromatin interactions |
ENSG00000126883 | chromatin interactions |
ENSG00000189295 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs559449220 | chr22:16898545-16898546 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
2 | rs182562795 | chr22:16898555-16898556 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
3 | rs373699078 | chr22:16898561-16898562 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
4 | rs545060994 | chr22:16898566-16898567 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
5 | rs78542264 | chr22:16898608-16898609 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
6 | rs78425737 | chr22:16898613-16898614 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
7 | rs75328997 | chr22:16898623-16898624 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
8 | rs79010720 | chr22:16898652-16898653 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
9 | rs530592118 | chr22:16898662-16898663 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
10 | rs566188213 | chr22:16898674-16898675 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
11 | rs549276290 | chr22:16898681-16898682 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
12 | rs141426645 | chr22:16898700-16898701 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
13 | rs150473930 | chr22:16898703-16898704 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
14 | rs546277019 | chr22:16898724-16898725 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
15 | rs74691342 | chr22:16898726-16898727 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
16 | rs571408910 | chr22:16898727-16898728 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
17 | rs538745378 | chr22:16898763-16898764 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
18 | rs75330947 | chr22:16898766-16898767 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
19 | rs76277697 | chr22:16898776-16898777 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
20 | rs3954535 | chr22:16898788-16898789 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
21 | rs3954536 | chr22:16898833-16898834 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
22 | rs570282580 | chr22:16898838-16898839 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
23 | rs4010539 | chr22:16898844-16898845 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
24 | rs192728954 | chr22:16898857-16898858 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
25 | rs556058983 | chr22:16898859-16898860 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
26 | rs141859835 | chr22:16898869-16898870 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
27 | rs535194455 | chr22:16898871-16898872 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
28 | rs558520091 | chr22:16898884-16898885 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
29 | rs552939165 | chr22:16898886-16898887 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
30 | rs577570776 | chr22:16898891-16898892 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
31 | rs545121882 | chr22:16898895-16898896 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
32 | rs563408065 | chr22:16898902-16898903 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
33 | rs575430580 | chr22:16898910-16898911 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
34 | rs571934772 | chr22:16898913-16898914 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
35 | rs542439503 | chr22:16898914-16898915 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
36 | rs140118579 | chr22:16898919-16898920 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
37 | rs145527211 | chr22:16898921-16898922 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
38 | rs4010540 | chr22:16898935-16898936 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
39 | rs62220623 | chr22:16898940-16898941 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
40 | rs4496407 | chr22:16898944-16898945 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
41 | rs377129542 | chr22:16898959-16898960 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
42 | rs528368597 | chr22:16898961-16898962 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
43 | rs4010541 | chr22:16898981-16898982 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
44 | rs546878606 | chr22:16898986-16898987 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
45 | rs564875150 | chr22:16898991-16898992 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
46 | rs532114712 | chr22:16898994-16898995 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
47 | rs12168803 | chr22:16898996-16898997 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
48 | rs7285448 | chr22:16899004-16899005 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
49 | rs568841089 | chr22:16899025-16899026 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
50 | rs62220624 | chr22:16899028-16899029 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Hodgkin''s lymphoma | 18641027 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Velocardiofacial syndrome | 20111667 | CNVD |
Medulloblastoma | 21979893 | CNVD |
sporadic solitary meningiomas | 19589153 | CNVD |
Myofibroblastic sarcoma | 19369631 | CNVD |
Autism | 22102821 | CNVD |
Autism | 22495311 | CNVD |
Lung cancer | 18438408 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Emanuel syndrome | 21549014 | CNVD |
Digeorge syndrome | 22283845 | CNVD |
Schizophrenia | 17504246 | CNVD |
Digeorge syndrome | 18033723 | CNVD |
22q11 deletion syndrome | 17034021 | CNVD |
22q11 deletion syndrome | 22511897 | CNVD |
22q11 deletion syndrome | 16829213 | CNVD |
Autism | 22067053 | CNVD |
Autism | 19218893 | CNVD |
Biliary cancer | 22067053 | CNVD |
Congenital heart defect | 21390462 | CNVD |
Digeorge syndrome | 16617304 | CNVD |
Emanuel syndrome | 18184694 | CNVD |
Non-syndromic sensorineural hearing loss | 18184694 | CNVD |
Obsessive-compulsive disorder | 22067053 | CNVD |
Psychosis | 22067053 | CNVD |
Schizophrenia | 19415332 | CNVD |
Schizophrenia | 20587603 | CNVD |
Shprintzen syndrome | 19443537 | CNVD |
absent pulmonary valve syndrome | 16795129 | CNVD |
language delay | 22067053 | CNVD |
periventricular nodular heterotopia | 20648244 | CNVD |
renal disease | 17924346 | CNVD |
Schizophrenia | 20433910 | CNVD |
22q11 deletion syndrome | 17028864 | CNVD |
Schizophrenia | 16969581 | CNVD |
Non-syndromic sensorineural hearing loss | 17135275 | CNVD |
velo-cardio-facial syndrome | 17135275 | CNVD |
Digeorge syndrome | 18787571 | CNVD |
Autism | 18925931 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
22q11.2 microdeletion syndrome | 21547621 | CNVD |
Congenital heart defect | 21308838 | CNVD |
Digeorge syndrome | 16512914 | CNVD |
Digeorge syndrome | 20954168 | CNVD |
Nuchal translucency | 21837766 | CNVD |
Right aortic arch in the fetus | 17066500 | CNVD |
Shprintzen syndrome | 17117043 | CNVD |
Tetralogy of fallot | 17405110 | CNVD |
Velocardiofacial syndrome | 20140301 | CNVD |
Velocardiofacial syndrome | 16512914 | CNVD |
bone mass and metabolism | 20516202 | CNVD |
choanal atresia | 18209138 | CNVD |
extracardiac malformations | 17086578 | CNVD |
fetal heart defects | 21308838 | CNVD |
parathyroid gland dysfunction | 16793949 | CNVD |
prenatal diagnosis | 20453657 | CNVD |
velopharyngeal insufficiency | 19620585 | CNVD |
Prader-willi syndrome | 20942916 | CNVD |
22q11 deletion syndrome | 17653112 | CNVD |
Chronic myelomonocytic leukemia | 16760666 | CNVD |
Non-syndromic sensorineural hearing loss | 16829213 | CNVD |
Non-syndromic sensorineural hearing loss | 16760666 | CNVD |
Chordoma | 21602918 | CNVD |
Cancer | 21637783 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Congenital heart defect | 22511896 | CNVD |
Breast cancer | 17603634 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Seminomas | 18059402 | CNVD |
Cancer | 16751803 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Epilepsy | 20923578 | CNVD |
Acute lymphoblastic leukemia | 19100363 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Metachromatic leukodystrophy | 18421352 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Gastrointestinal stromal cancer | 19259404 | CNVD |
Gastrointestinal stromal cancer | 20470368 | CNVD |
Gastrointestinal stromal cancer | 17535989 | CNVD |
Paraganglioma | 17535989 | CNVD |
Pulmonary chondroma | 17535989 | CNVD |
Breast cancer | 17142309 | CNVD |
Acute lymphoblastic leukemia | 21248843 | CNVD |
Breast cancer | 21858162 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Myelodysplastic syndrome | 21251322 | CNVD |
Non-syndromic sensorineural hearing loss | 18496225 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Adenoid cystic carcinoma | 18332873 | CNVD |
Breast cancer | 21509527 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Prostate cancer | 18632612 | CNVD |
Gastric cancer | 22591714 | CNVD |
Autism | 22958593 | CNVD |
Digeorge syndrome | 16199537 | CNVD |
Schizophrenia | 22958593 | CNVD |
Schizophrenia | 21285140 | CNVD |
Schizophrenia | 22241247 | CNVD |
Autism | 22241247 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 18628472 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Ovarian neoplasms | 16753589 | CNVD |
Schizophrenia | 21399695 | CNVD |
22q11.21 microdeletion syndrome | 19193630 | CNVD |
Cat eye syndrome | 21549014 | CNVD |
Digeorge syndrome | 21549014 | CNVD |
22q11.2 microdeletion syndrome | 22051516 | CNVD |
22q11.2 microdeletion syndrome | 18483005 | CNVD |
22q11.2 microdeletion syndrome | 19565140 | CNVD |
22q11.2 microdeletion syndrome | 20396437 | CNVD |
22q11.2 microdeletion syndrome | 21390462 | CNVD |
22q11.2 microdeletion syndrome | 21573985 | CNVD |
Austim spectrum disorder | 21302340 | CNVD |
Autism | 20970697 | CNVD |
Bipolar disorder | 19114987 | CNVD |
Congenital heart defect | 21257016 | CNVD |
Developmental delay | 18414209 | CNVD |
DiGeorge-Velo cardiofacial | 19284877 | CNVD |
Epilepsy | 20970697 | CNVD |
Heart disease | 20551144 | CNVD |
Hughes'' syndrome | 16595601 | CNVD |
Mental retardation | 18414209 | CNVD |
Okamoto syndrome | 19046188 | CNVD |
Primary immunodeficiency | 22566803 | CNVD |
Schizophrenia | 20877625 | CNVD |
Schizophrenia | 20553308 | CNVD |
Schizophrenia | 21956041 | CNVD |
Schizophrenia | 20970697 | CNVD |
Tetralogy of Fallot | 22912587 | CNVD |
Velocardiofacial syndrome | 17556857 | CNVD |
Velocardiofacial syndrome | 20206275 | CNVD |
Velocardiofacial syndrome | 20970697 | CNVD |
delayed speech development | 21274400 | CNVD |
velo-cardio-facial syndrome | 16511839 | CNVD |
velo-cardio-facial syndrome | 21763005 | CNVD |
22q11.2 microdeletion syndrome | 18799940 | CNVD |
Digeorge syndrome | 20877625 | CNVD |
22q11.2 microdeletion syndrome | 18923514 | CNVD |
Congenital heart defect | 22185286 | CNVD |
DiGeorge-Velo cardiofacial | 16773131 | CNVD |
Digeorge syndrome | 20186050 | CNVD |
velo-cardio-facial conotruncal-face syndrome | 20186050 | CNVD |
22q11.2 microdeletion syndrome | 22116936 | CNVD |
Disorders of sex development | 22290220 | CNVD |
22q11.2 duplication syndrome | 18923514 | CNVD |
Autism | 22095694 | CNVD |
Mental retardation | 19951919 | CNVD |
Honadal dysgenesis | 21048976 | CNVD |
Mental retardation | 16773131 | CNVD |
22q11.2 microdeletion syndrome | 22395003 | CNVD |
22q11.2 microdeletion syndrome | 18691436 | CNVD |
22q11.2 microdeletion syndrome | 18053182 | CNVD |
22q11.2 microdeletion syndrome | 18324686 | CNVD |
22q11.2 microdeletion syndrome | 20074913 | CNVD |
Congenital heart defect | 20802965 | CNVD |
Congenital heart defect | 21134246 | CNVD |
DiGeorge syndrome | 19040613 | CNVD |
DiGeorge-Velo cardiofacial | 18179902 | CNVD |
Digeorge syndrome | 18172682 | CNVD |
Digeorge syndrome | 22470819 | CNVD |
Digeorge syndrome | 21364285 | CNVD |
Neuroendocrine carcinoma | 22470819 | CNVD |
Non-syndromic sensorineural hearing loss | 20069674 | CNVD |
Smith-Magenis syndrome | 18301319 | CNVD |
Tetralogy of fallot | 19144126 | CNVD |
Velo-cardio-facial syndrome | 21364285 | CNVD |
Velocardiofacial syndrome | 18788013 | CNVD |
cardiac malformation | 20573211 | CNVD |
cardiac malformation | 18172682 | CNVD |
velo-cardio-facial syndrome | 18636631 | CNVD |
Schizophrenia | 21822266 | CNVD |
synaptic plasticity | 21368174 | CNVD |
Schizophrenia | 18043741 | CNVD |
sporadic birth defects | 19047251 | CNVD |
Autism | 19046189 | CNVD |
DiGeorge-Velo cardiofacial | 19047251 | CNVD |
Hypernasal speech | 21968682 | CNVD |
Mental retardation | 17339581 | CNVD |
diverse phenotype | 16760730 | CNVD |
Mental retardation | 20152051 | CNVD |
Breast cancer | 16608533 | CNVD |
Melanoma | 18172304 | CNVD |
Ovarian cancer | 22174824 | CNVD |
Schizophrenia | 19197363 | CNVD |
Esophageal cancer | 21851588 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Schizophrenia | 20388499 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Intellectual disability | 21811512 | CNVD |
Breast cancer | 22522925 | CNVD |
Wilms tumour | 21544195 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
Schizophrenia | 18511947 | CNVD |
Autism | 18522746 | CNVD |
Breast cancer | 20409316 | CNVD |
aortic dissecting aneurysms | 22263138 | CNVD |
Schizophrenia | 20967226 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr22:16904200-16904600 | ZNF genes & repeats | H1 Derived Mesenchymal Stem Cells | ES cell derived |
2 | chr22:16904200-16904600 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
3 | chr22:16904200-16904600 | ZNF genes & repeats | Right Atrium | heart |
4 | chr22:16959000-16959200 | Flanking Bivalent TSS/Enh | Primary T helper memory cells from peripheral blood 2 | blood |
5 | chr22:16959000-16959200 | ZNF genes & repeats | Primary T helper 17 cells PMA-I stimulated | -- |
6 | chr22:16959000-16959200 | ZNF genes & repeats | Primary T helper cells fromperipheralblood | blood |
7 | chr22:16959000-16959200 | ZNF genes & repeats | Primary T regulatory cells fromperipheralblood | blood |
8 | chr22:16959000-16959200 | Flanking Bivalent TSS/Enh | Primary T killer memory cells from peripheral blood | blood |
9 | chr22:16959000-16959200 | ZNF genes & repeats | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
10 | chr22:16959000-16959200 | ZNF genes & repeats | Muscle Satellite Cultured Cells | -- |
11 | chr22:16959000-16959200 | ZNF genes & repeats | Colon Smooth Muscle | Colon |
12 | chr22:16959000-16959200 | ZNF genes & repeats | Duodenum Mucosa | Duodenum |
13 | chr22:16959000-16959200 | ZNF genes & repeats | Esophagus | oesophagus |
14 | chr22:16959000-16959200 | ZNF genes & repeats | Gastric | stomach |
15 | chr22:16959000-16959200 | Enhancers | Left Ventricle | heart |
16 | chr22:16959000-16959200 | ZNF genes & repeats | Rectal Mucosa Donor 29 | rectum |
17 | chr22:16959000-16959200 | ZNF genes & repeats | Rectal Mucosa Donor 31 | rectum |
18 | chr22:16959000-16959200 | ZNF genes & repeats | Skeletal Muscle Male | skeletal muscle |
19 | chr22:16959000-16959200 | ZNF genes & repeats | Skeletal Muscle Female | skeletal muscle |
20 | chr22:16959000-16959200 | Enhancers | Thymus | Thymus |
21 | chr22:16959200-16959600 | Weak transcription | Gastric | stomach |
22 | chr22:16994800-16995000 | Enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
23 | chr22:17000600-17001600 | Enhancers | Placenta | Placenta |
24 | chr22:17001000-17001200 | Flanking Bivalent TSS/Enh | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
25 | chr22:17001000-17001200 | Flanking Bivalent TSS/Enh | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
26 | chr22:17001000-17001200 | Enhancers | Adipose Nuclei | Adipose |
27 | chr22:17001000-17001400 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
28 | chr22:17001000-17001400 | ZNF genes & repeats | Primary hematopoietic stem cells short term culture | blood |
29 | chr22:17001000-17001600 | Active TSS | Fetal Brain Female | brain |
30 | chr22:17001000-17001800 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
31 | chr22:17001000-17001800 | ZNF genes & repeats | Right Atrium | heart |
32 | chr22:17001200-17001400 | Bivalent Enhancer | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
33 | chr22:17001200-17001400 | Bivalent/Poised TSS | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
34 | chr22:17001400-17001600 | Flanking Bivalent TSS/Enh | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
35 | chr22:17001400-17001600 | Flanking Bivalent TSS/Enh | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
36 | chr22:17001600-17001800 | Bivalent Enhancer | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
37 | chr22:17001600-17001800 | Bivalent Enhancer | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
38 | chr22:17001600-17002000 | Flanking Active TSS | Placenta | Placenta |
39 | chr22:17001800-17002000 | Strong transcription | Right Atrium | heart |
40 | chr22:17002000-17039200 | Weak transcription | Right Atrium | heart |
41 | chr22:17007800-17008800 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
42 | chr22:17012600-17013200 | Enhancers | Spleen | Spleen |
43 | chr22:17023600-17025000 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
44 | chr22:17024000-17024600 | Enhancers | K562 | blood |
45 | chr22:17024600-17025000 | Bivalent Enhancer | K562 | blood |
46 | chr22:17030600-17031000 | Enhancers | K562 | blood |
47 | chr22:17038200-17038800 | Enhancers | K562 | blood |
48 | chr22:17038200-17042600 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
49 | chr22:17038800-17042000 | ZNF genes & repeats | H1 Cell Line | embryonic stem cell |
50 | chr22:17039000-17039800 | Enhancers | Placenta | Placenta |