Variant report

Variant	esv2433892
Chromosome Location	chr15:51585683-51587398
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:51578136..51580943-chr15:51585149..51588090,2	MCF-7	breast:
2	chr15:51584655..51587117-chr15:51590888..51593772,2	MCF-7	breast:

Extended variants
information (count: 94 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:94 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2470178	chr15:51585711-51585712	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs116629154	chr15:51585730-51585731	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs57973062	chr15:51585742-51585743	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs58159173	chr15:51585746-51585747	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs542972842	chr15:51585747-51585748	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs557749098	chr15:51585759-51585760	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs75908648	chr15:51585761-51585762	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs572877383	chr15:51585783-51585784	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs117367099	chr15:51585801-51585802	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs562395115	chr15:51585857-51585858	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs529508855	chr15:51585879-51585880	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs544792934	chr15:51585891-51585892	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs563029693	chr15:51585902-51585903	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs550703695	chr15:51585904-51585905	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs533075275	chr15:51585906-51585907	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs539615927	chr15:51585910-51585911	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs143128123	chr15:51585925-51585926	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs527263800	chr15:51585942-51585943	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs36066823	chr15:51585951-51585952	Weak transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs567550751	chr15:51585965-51585966	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs192299290	chr15:51585988-51585989	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs555952576	chr15:51585990-51585991	Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs567010558	chr15:51586022-51586023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs571078156	chr15:51586023-51586024	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs376175024	chr15:51586043-51586044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs557812557	chr15:51586048-51586049	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs2445756	chr15:51586051-51586052	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs566082014	chr15:51586053-51586054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs370833432	chr15:51586087-51586088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs574284112	chr15:51586089-51586090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs184405020	chr15:51586094-51586095	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs189553822	chr15:51586098-51586099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs578202080	chr15:51586099-51586100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs545159257	chr15:51586109-51586110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs560280429	chr15:51586111-51586112	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs112555044	chr15:51586117-51586118	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs548967503	chr15:51586135-51586136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs555323443	chr15:51586167-51586168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs28731262	chr15:51586206-51586207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs531651686	chr15:51586213-51586214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs184055249	chr15:51586255-51586256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs549638949	chr15:51586332-51586333	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs185518082	chr15:51586374-51586375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs544317637	chr15:51586389-51586390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs551504450	chr15:51586399-51586400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs59089679	chr15:51586438-51586439	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs533995485	chr15:51586469-51586470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs555747205	chr15:51586490-51586491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs371107032	chr15:51586527-51586528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs573922672	chr15:51586565-51586566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Myelofibrosis	22110671	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51579600-51590800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:51583400-51585800	Strong transcription	Placenta	Placenta
3	chr15:51583400-51591000	Weak transcription	Brain Substantia Nigra	brain
4	chr15:51585800-51586000	Genic enhancers	Placenta	Placenta
5	chr15:51586000-51587400	Weak transcription	Placenta	Placenta
6	chr15:51586400-51589200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links