Variant report

Variant	esv2437446
Chromosome Location	chr1:77099856-77101457
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr1:77101262-77101931	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr1:77101388-77101876	MCF10A-Er-Src	breast:	n/a	n/a
3	MAFF	chr1:77100652-77100884	K562	blood:	n/a	chr1:77100785-77100803
4	MAFF	chr1:77100624-77100964	HepG2	liver:	n/a	chr1:77100785-77100803
5	MAFK	chr1:77100671-77100904	Hela-S3	cervix:	n/a	chr1:77100792-77100802
6	MAFK	chr1:77100654-77100951	K562	blood:	n/a	chr1:77100792-77100802
7	MAFK	chr1:77100654-77100952	HepG2	liver:	n/a	chr1:77100792-77100802
8	MAFK	chr1:77100631-77100957	IMR90	lung:	n/a	chr1:77100792-77100802
9	MAFK	chr1:77100619-77100976	HepG2	liver:	n/a	chr1:77100792-77100802
10	MYC	chr1:77101441-77101941	MCF10A-Er-Src	breast:	n/a	n/a
11	MYC	chr1:77101404-77101826	MCF10A-Er-Src	breast:	n/a	n/a
12	POLR2A	chr1:77101357-77101557	MCF10A-Er-Src	breast:	n/a	n/a
13	STAT3	chr1:77101449-77101875	MCF10A-Er-Src	breast:	n/a	n/a
14	STAT3	chr1:77101428-77101816	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000272855	TF binding region

Extended variants
information (count: 70 )
Associated
traits (count: 103 )

Variant overlapped rSNPs/rCNVs (count:70 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs143870928	chr1:77099858-77099859	Flanking Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs75807779	chr1:77099947-77099948	Flanking Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs560128377	chr1:77099952-77099953	Flanking Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs571962558	chr1:77099984-77099985	Flanking Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs374573455	chr1:77100011-77100012	Flanking Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs539081302	chr1:77100037-77100038	Flanking Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs552496921	chr1:77100039-77100040	Flanking Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs545753123	chr1:77100042-77100043	Flanking Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs146848686	chr1:77100065-77100066	Flanking Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs527365788	chr1:77100124-77100125	Flanking Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs531842731	chr1:77100158-77100159	Flanking Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs189177817	chr1:77100171-77100172	Flanking Active TSS Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs61771670	chr1:77100189-77100190	Flanking Active TSS Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs529377886	chr1:77100206-77100207	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs61771671	chr1:77100207-77100208	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs369308754	chr1:77100226-77100227	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs140642542	chr1:77100244-77100245	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs568751982	chr1:77100287-77100288	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs539472214	chr1:77100327-77100328	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs551708024	chr1:77100337-77100338	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs201969503	chr1:77100347-77100348	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs341018	chr1:77100349-77100350	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs367970021	chr1:77100376-77100377	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs112171097	chr1:77100378-77100379	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs112874978	chr1:77100379-77100380	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs556420207	chr1:77100517-77100518	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs574668955	chr1:77100520-77100521	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs369941989	chr1:77100527-77100528	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs535604055	chr1:77100534-77100535	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs553604551	chr1:77100535-77100536	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs572058190	chr1:77100627-77100628	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs180756897	chr1:77100636-77100637	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs563727946	chr1:77100646-77100647	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs576378084	chr1:77100647-77100648	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs543689036	chr1:77100648-77100649	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs372026540	chr1:77100649-77100650	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs529482334	chr1:77100679-77100680	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs150124486	chr1:77100692-77100693	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs61771672	chr1:77100705-77100706	Enhancers Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs551527199	chr1:77100724-77100725	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs576067747	chr1:77100763-77100764	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs570042168	chr1:77100767-77100768	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs373423158	chr1:77100779-77100780	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
44	rs77277876	chr1:77100792-77100793	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
45	rs171017	chr1:77100828-77100829	Enhancers Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs621590	chr1:77100921-77100922	Enhancers Weak transcription	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs571875312	chr1:77100973-77100974	Enhancers Weak transcription	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs341017	chr1:77100994-77100995	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs535294294	chr1:77101001-77101002	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs145511584	chr1:77101060-77101061	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:103)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Colorectal cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Coronary Disease	20032323	CNVD
Prostate cancer	21965145	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Stargardt''s disease	17277736	CNVD
Neuroblastoma	17897457	CNVD
Uveal melanoma	21693616	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-syndromic sensorineural hearing loss	22290220	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	21264507	CNVD
Acute myeloid leukemia	16864856	CNVD
Astrocytoma	17387387	CNVD
Cancer	21499728	CNVD
Glioblastoma multiforme	17387387	CNVD
Oligodendroglial tumors	17285580	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Neuroblastoma	17535989	CNVD
Pheochromocytoma	17535989	CNVD
Prostate cancer	16705090	CNVD
Astrocytoma	17934521	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Neuroblastoma	17533364	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21385341	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Chordoma	21602918	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Multiple myeloma	16461302	CNVD
Melanoma	17363583	CNVD
Cancer	21129771	CNVD
Autosomal dominant nocturnal frontal lobe epilepsy	18472482	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-small cell lung cancer	20864512	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thrombocytopenia-absent radius syndrome	21933853	CNVD
Psychiatric disorder	22848183	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	20409316	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17393978	CNVD
Cervical cancer	21062161	CNVD
Cancer	21183584	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21364760	CNVD
Rett syndrome	21593744	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	17133270	CNVD
Type 2 diabetes	21956041	CNVD
Uveal melanoma	20484589	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Ewing''s sarcoma	17952124	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Poland''s syndrome	22110015	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioblastoma multiforme	21922591	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Cancer	22429812	CNVD
Effusion lymphoma	18079361	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
small cell lung cancer	20016488	CNVD
Pancreatic cancer	17952125	CNVD
Bladder cancer	21909424	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77098600-77106200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:77098800-77100200	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr1:77099400-77100200	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr1:77100200-77102800	Enhancers	Primary T cells from cord blood	blood
5	chr1:77101400-77102000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:77101400-77102000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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