Variant report

Variant	esv2441511
Chromosome Location	chr3:155203721-155205191
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MME-4	chr3:155203592-155203838	ENSG00000242925.1
2	lnc-MME-4	chr3:155204750-155204910	ENSG00000242925.1

Extended variants
information (count: 56 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:56 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs546368293	chr3:155203723-155203724	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
2	rs112032589	chr3:155203731-155203732	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
3	rs140169608	chr3:155203767-155203768	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
4	rs532359201	chr3:155203790-155203791	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
5	rs373163685	chr3:155203799-155203800	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
6	rs541242583	chr3:155203845-155203846	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs185733343	chr3:155203854-155203855	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs76314695	chr3:155203894-155203895	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs149842971	chr3:155203928-155203929	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs73011560	chr3:155203960-155203961	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs149711927	chr3:155204005-155204006	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs190594047	chr3:155204147-155204148	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs558232361	chr3:155204172-155204173	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs371464000	chr3:155204231-155204232	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs570670593	chr3:155204235-155204236	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs534910104	chr3:155204279-155204280	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs374324475	chr3:155204301-155204302	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs371470036	chr3:155204302-155204303	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs1965115	chr3:155204303-155204304	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs2011748	chr3:155204309-155204310	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs575062092	chr3:155204312-155204313	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs397733786	chr3:155204324-155204325	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs578247564	chr3:155204326-155204327	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs371327809	chr3:155204354-155204355	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs545719722	chr3:155204362-155204363	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs557323043	chr3:155204376-155204377	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs575714694	chr3:155204377-155204378	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs546282397	chr3:155204399-155204400	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs182934076	chr3:155204459-155204460	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs376317534	chr3:155204470-155204471	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs564584392	chr3:155204498-155204499	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs577081508	chr3:155204535-155204536	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs111804203	chr3:155204540-155204541	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs188638813	chr3:155204567-155204568	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs192199302	chr3:155204579-155204580	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs563235688	chr3:155204606-155204607	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs548234298	chr3:155204634-155204635	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs78185840	chr3:155204638-155204639	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs369968333	chr3:155204669-155204670	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs183446488	chr3:155204700-155204701	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs187340850	chr3:155204743-155204744	Weak transcription Strong transcription Enhancers Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs148917468	chr3:155204839-155204840	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	lncRNA	n/a	Overlapped CNVs	n/a
43	rs73011565	chr3:155204871-155204872	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs542680847	chr3:155204911-155204912	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs1125539	chr3:155204939-155204940	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
46	rs192138552	chr3:155204949-155204950	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs1125538	chr3:155204992-155204993	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs143737074	chr3:155205110-155205111	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs373973443	chr3:155205111-155205112	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs4411922	chr3:155205113-155205114	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Squamous cell cancer	20885788	CNVD
Melanoma	18172304	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22032731	CNVD
Breast cancer	16461572	CNVD
Neuroblastoma	17533364	CNVD
Cervical Cancer	21857958	CNVD
Melanoma	21693616	CNVD
Lung cancer	21426551	CNVD
Cancer	21637783	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oral cancer	21386901	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	22065749	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Basal cell lymphoma	21115979	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Hepatocellular carcinoma	16750200	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myelodysplastic syndrome	21251322	CNVD
Blepharophimosis-ptosis-epicanthus inversus syndrome	22067867	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	21364760	CNVD
Basal cell lymphoma	17170743	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	16608533	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-small cell lung cancer	19010865	CNVD
abnormal development	18461090	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Neurodevelopmental disorder	22521361	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Cancer	17440070	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16547154	CNVD

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155187200-155216200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:155195000-155230400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:155196200-155231600	Weak transcription	Gastric	stomach
4	chr3:155197000-155218800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:155197800-155216000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr3:155198400-155209800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:155198400-155230600	Weak transcription	Fetal Intestine Large	intestine
8	chr3:155198800-155221600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr3:155198800-155230800	Weak transcription	Pancreas	Pancrea
10	chr3:155199000-155229800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr3:155199400-155210800	Weak transcription	Stomach Mucosa	stomach
12	chr3:155199600-155214800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr3:155200600-155230200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr3:155200800-155204800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:155200800-155210200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:155200800-155214600	Weak transcription	Fetal Intestine Small	intestine
17	chr3:155200800-155218000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:155200800-155223600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:155200800-155251400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr3:155201000-155209000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr3:155201000-155214600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:155202200-155211800	Weak transcription	Brain Anterior Caudate	brain
23	chr3:155202400-155203800	Genic enhancers	Fetal Thymus	thymus
24	chr3:155202400-155230000	Weak transcription	A549	lung
25	chr3:155202600-155203800	Genic enhancers	Thymus	Thymus
26	chr3:155202600-155204000	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr3:155202600-155205600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr3:155202800-155215800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr3:155203000-155216200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr3:155203400-155203800	Flanking Active TSS	Primary T cells from cord blood	blood
31	chr3:155203400-155206800	Genic enhancers	Dnd41	blood
32	chr3:155203400-155215600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr3:155203600-155203800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:155203800-155204200	Enhancers	Thymus	Thymus
35	chr3:155203800-155204800	Enhancers	Primary T cells from cord blood	blood
36	chr3:155203800-155208400	Weak transcription	Fetal Thymus	thymus
37	chr3:155203800-155211400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr3:155204000-155209400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr3:155204200-155209600	Weak transcription	Thymus	Thymus
40	chr3:155204800-155205400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr3:155205000-155216200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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