Variant report

Variant	esv2457858
Chromosome Location	chr10:26684415-26690170
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 275 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:275 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11015086	chr10:26684463-26684464	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs191086597	chr10:26684486-26684487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs560378792	chr10:26684515-26684516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs10659787	chr10:26684527-26684528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs56392511	chr10:26684528-26684529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs72031564	chr10:26684537-26684538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs559277208	chr10:26684553-26684554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs528425353	chr10:26684554-26684555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs58702827	chr10:26684596-26684597	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs551659371	chr10:26684600-26684601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs59172364	chr10:26684605-26684606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs531425754	chr10:26684612-26684613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs564875336	chr10:26684615-26684616	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs58084468	chr10:26684647-26684648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs373508203	chr10:26684653-26684654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs376979702	chr10:26684662-26684663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs370263323	chr10:26684673-26684674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs550709463	chr10:26684681-26684682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs373748296	chr10:26684695-26684696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs386742126	chr10:26684700-26684701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs386742127	chr10:26684706-26684707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs367869690	chr10:26684763-26684764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs370505396	chr10:26684768-26684769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs567389232	chr10:26684773-26684774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs113744606	chr10:26684780-26684781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs115715792	chr10:26684781-26684782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs144185981	chr10:26684795-26684796	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs372717322	chr10:26684796-26684797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs534990389	chr10:26684804-26684805	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs376004644	chr10:26684822-26684823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs368556961	chr10:26684827-26684828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs111339425	chr10:26684835-26684836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs190246377	chr10:26684843-26684844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs193274014	chr10:26684874-26684875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs140197422	chr10:26684884-26684885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs574123084	chr10:26684899-26684900	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs542742890	chr10:26684917-26684918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs185076870	chr10:26684933-26684934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs573025349	chr10:26684987-26684988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs545343553	chr10:26685032-26685033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs73594345	chr10:26685035-26685036	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs373008097	chr10:26685066-26685067	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs75170793	chr10:26685078-26685079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs190405261	chr10:26685186-26685187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs116599557	chr10:26685200-26685201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs529806742	chr10:26685225-26685226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs563214374	chr10:26685263-26685264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs546333830	chr10:26685272-26685273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs566285748	chr10:26685283-26685284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs534856648	chr10:26685317-26685318	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26681600-26688200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:26681600-26694200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:26689200-26689400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links