The 2.0 version of rSNPBase

Variant report

Variant esv2460957
Chromosome Location chr1:179945486-179945490
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179924800-179963600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr1:179925200-179946200 Weak transcription Stomach Mucosa stomach
3 chr1:179925400-179946000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
4 chr1:179926800-179961400 Weak transcription A549 lung
5 chr1:179927000-179965600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr1:179936000-179946400 Weak transcription NHLF lung
7 chr1:179936200-179946000 Weak transcription Fetal Lung lung
8 chr1:179936200-179946000 Weak transcription HepG2 liver
9 chr1:179936400-179955600 Weak transcription Dnd41 blood
10 chr1:179936600-179958800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
11 chr1:179937800-179946200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr1:179938000-179983200 Weak transcription Brain Germinal Matrix brain
13 chr1:179938400-179948600 Weak transcription Fetal Muscle Trunk muscle
14 chr1:179938600-179946000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr1:179938600-179946000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
16 chr1:179938600-179946000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr1:179938600-179946000 Weak transcription iPS-18 Cell Line embryonic stem cell
18 chr1:179938600-179954600 Weak transcription Fetal Thymus thymus
19 chr1:179938600-179956400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
20 chr1:179938600-179956800 Weak transcription Duodenum Mucosa Duodenum
21 chr1:179938600-179956800 Weak transcription Fetal Intestine Small intestine
22 chr1:179938600-179956800 Weak transcription Fetal Stomach stomach
23 chr1:179938600-179957600 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr1:179938600-179959000 Weak transcription Sigmoid Colon Sigmoid Colon
25 chr1:179938600-179965800 Weak transcription Esophagus oesophagus
26 chr1:179938600-179975800 Weak transcription Thymus Thymus
27 chr1:179938600-179983200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr1:179938600-179984600 Weak transcription Lung lung
29 chr1:179938800-179953400 Weak transcription Fetal Intestine Large intestine
30 chr1:179938800-179959800 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr1:179939000-179946000 Weak transcription Primary hematopoietic stem cells short term culture blood
32 chr1:179939000-179948800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr1:179939000-179954800 Weak transcription Primary T regulatory cells fromperipheralblood blood
34 chr1:179939000-179989000 Weak transcription Gastric stomach
35 chr1:179939200-179945800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
36 chr1:179939200-179946000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr1:179939600-179955600 Weak transcription Primary hematopoietic stem cells blood
38 chr1:179939800-179946000 Weak transcription Primary T killer memory cells from peripheral blood blood
39 chr1:179939800-179946200 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr1:179939800-179946200 Weak transcription Pancreatic Islets Pancreatic Islet
41 chr1:179939800-179948000 Weak transcription Primary T helper naive cells from peripheral blood blood
42 chr1:179939800-179956800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr1:179939800-179959400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
44 chr1:179939800-179974800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
45 chr1:179940000-179946000 Weak transcription Liver Liver
46 chr1:179940000-179953400 Weak transcription Muscle Satellite Cultured Cells --
47 chr1:179940000-179961200 Weak transcription HSMM muscle
48 chr1:179940600-179946000 Weak transcription Skeletal Muscle Female skeletal muscle
49 chr1:179940800-179956800 Weak transcription Left Ventricle heart
50 chr1:179941000-179946000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell

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Last update: Aug 31, 2015