Variant report

Variant	esv2463749
Chromosome Location	chr6:61900309-61904920
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 662 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:662 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs540179066	chr6:61900310-61900311	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs112673589	chr6:61900338-61900339	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs561533471	chr6:61900360-61900361	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs529555151	chr6:61900366-61900367	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs551010389	chr6:61900396-61900397	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs199890627	chr6:61900398-61900399	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs112554173	chr6:61900405-61900406	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs569236387	chr6:61900413-61900414	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs533341474	chr6:61900415-61900416	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs551607049	chr6:61900420-61900421	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs373901518	chr6:61900426-61900427	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs534044399	chr6:61900431-61900432	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs111941472	chr6:61900458-61900459	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs555702050	chr6:61900459-61900460	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs111593113	chr6:61900462-61900463	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs189071479	chr6:61900466-61900467	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs572905541	chr6:61900468-61900469	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs200189913	chr6:61900470-61900471	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs192999020	chr6:61900471-61900472	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs113946044	chr6:61900498-61900499	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs567577840	chr6:61900503-61900504	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs538268398	chr6:61900528-61900529	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs557279588	chr6:61900530-61900531	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs575649051	chr6:61900541-61900542	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs546015623	chr6:61900542-61900543	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs556197655	chr6:61900546-61900547	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs572851530	chr6:61900560-61900561	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs201791267	chr6:61900571-61900572	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs561609712	chr6:61900591-61900592	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs148945067	chr6:61900595-61900596	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs139041149	chr6:61900608-61900609	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs576059689	chr6:61900613-61900614	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs550408786	chr6:61900618-61900619	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs149263406	chr6:61900635-61900636	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs144529422	chr6:61900644-61900645	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs562839600	chr6:61900645-61900646	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs201528546	chr6:61900646-61900647	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs141345377	chr6:61900647-61900648	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs140698754	chr6:61900651-61900652	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs115988782	chr6:61900655-61900656	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs7762587	chr6:61900657-61900658	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs551518827	chr6:61900663-61900664	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs141861126	chr6:61900667-61900668	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs146838332	chr6:61900669-61900670	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs145428013	chr6:61900673-61900674	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs145894394	chr6:61900676-61900677	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs566741558	chr6:61900682-61900683	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs140034874	chr6:61900683-61900684	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs139946848	chr6:61900685-61900686	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs147808618	chr6:61900687-61900688	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Lung cancer	19547694	CNVD
Myelofibrosis	22110671	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:61893800-61905800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr6:61894000-61901800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:61894800-61901800	Weak transcription	K562	blood
4	chr6:61896400-61902400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr6:61898000-61900600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:61900200-61902800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
7	chr6:61900600-61901000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:61900600-61902400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr6:61900600-61905400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
10	chr6:61901000-61901800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:61901000-61901800	Weak transcription	Brain Angular Gyrus	brain
12	chr6:61901400-61902400	ZNF genes & repeats	Primary T cells from cord blood	blood
13	chr6:61901600-61902400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:61901600-61902600	ZNF genes & repeats	HepG2	liver
15	chr6:61901800-61902000	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
16	chr6:61901800-61902000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
17	chr6:61901800-61902000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr6:61901800-61902000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
19	chr6:61901800-61902000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
20	chr6:61901800-61902000	ZNF genes & repeats	Brain Hippocampus Middle	brain
21	chr6:61901800-61902000	ZNF genes & repeats	Fetal Lung	lung
22	chr6:61901800-61902000	ZNF genes & repeats	A549	lung
23	chr6:61901800-61902000	ZNF genes & repeats	HSMMtube	muscle
24	chr6:61901800-61902000	ZNF genes & repeats	NHDF-Ad	bronchial
25	chr6:61901800-61902200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:61901800-61902200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:61901800-61902200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
28	chr6:61901800-61902200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:61901800-61902200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
30	chr6:61901800-61902200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:61901800-61902200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:61901800-61902200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
33	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
35	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
37	chr6:61901800-61902200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:61901800-61902200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
39	chr6:61901800-61902200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:61901800-61902200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
41	chr6:61901800-61902200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:61901800-61902200	ZNF genes & repeats	Brain Angular Gyrus	brain
43	chr6:61901800-61902200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
44	chr6:61901800-61902200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:61901800-61902200	ZNF genes & repeats	Brain Substantia Nigra	brain
46	chr6:61901800-61902200	ZNF genes & repeats	Colonic Mucosa	Colon
47	chr6:61901800-61902200	ZNF genes & repeats	Colon Smooth Muscle	Colon
48	chr6:61901800-61902200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
49	chr6:61901800-61902200	ZNF genes & repeats	Fetal Brain Male	brain
50	chr6:61901800-61902200	ZNF genes & repeats	Fetal Heart	heart

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