Variant report

Variant	esv2467119
Chromosome Location	chr8:119446418-119448043
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 142 )

Variant overlapped rSNPs/rCNVs (count:56 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs4876835	chr8:119446485-119446486	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs4876416	chr8:119446504-119446505	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs114125819	chr8:119446528-119446529	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs187107473	chr8:119446556-119446557	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs190293511	chr8:119446560-119446561	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs373234468	chr8:119446567-119446568	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs182590709	chr8:119446572-119446573	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs145298058	chr8:119446604-119446605	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs16891009	chr8:119446688-119446689	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs58107670	chr8:119446736-119446737	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs4876417	chr8:119446777-119446778	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs543146863	chr8:119446922-119446923	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs4876836	chr8:119446957-119446958	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs79195324	chr8:119446962-119446963	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs147653058	chr8:119446995-119446996	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs13255144	chr8:119447015-119447016	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs532861820	chr8:119447105-119447106	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs541705131	chr8:119447114-119447115	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs372949117	chr8:119447127-119447128	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs575937936	chr8:119447203-119447204	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs28433975	chr8:119447328-119447329	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs111288356	chr8:119447338-119447339	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs370387118	chr8:119447353-119447354	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs374498940	chr8:119447354-119447355	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs376169032	chr8:119447355-119447356	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs142182938	chr8:119447370-119447371	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs10282819	chr8:119447406-119447407	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs114952306	chr8:119447413-119447414	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs10283133	chr8:119447420-119447421	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
30	rs570263937	chr8:119447454-119447455	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs534611071	chr8:119447462-119447463	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs552980468	chr8:119447513-119447514	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs185042755	chr8:119447532-119447533	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs10283143	chr8:119447586-119447587	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs561548264	chr8:119447606-119447607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs536227648	chr8:119447611-119447612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs112146007	chr8:119447630-119447631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs189741364	chr8:119447636-119447637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs560268453	chr8:119447680-119447681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs529357384	chr8:119447688-119447689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs549056787	chr8:119447690-119447691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs562950676	chr8:119447721-119447722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs543893388	chr8:119447742-119447743	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs559206769	chr8:119447757-119447758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs530345669	chr8:119447806-119447807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs372822830	chr8:119447817-119447818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs577504253	chr8:119447874-119447875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs151056625	chr8:119447920-119447921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs559775779	chr8:119447930-119447931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs529729474	chr8:119447954-119447955	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:142)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Gastric cancer	17908304	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Testicular cancer	18059402	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	17603634	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Breast cancer	17899364	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Breast cancer	21611746	CNVD
Developmental delay	21147756	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Non-small cell lung cancer	19010865	CNVD
small cell lung cancer	20016488	CNVD
Chronic myeloid leukemia	21384125	CNVD
Papillary thyroid cancer	17515504	CNVD
Basal cell lymphoma	17053054	CNVD
Cancer	20164920	CNVD
Breast cancer	20932292	CNVD
Gastric cancer	22539939	CNVD
Breast cancer	22056952	CNVD
Langer-Giedion syndrome	16773131	CNVD
Lung cancer	16740712	CNVD
Mental retardation	16773131	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Langer-Giedion syndrome	22470819	CNVD
Cornelia de Lange syndrome	24599119	CNVD
Gastric cancer	21528007	CNVD
Breast cancer	22532251	CNVD
Cervical cancer	21062161	CNVD
Cancer	21129771	CNVD
benign familial neonatal convulsions	18472482	CNVD
Breast cancer	16417655	CNVD
Astrocytoma	17387387	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
T-cell lymphomas	19863542	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	20607354	CNVD
Breast cancer	20814816	CNVD
Colorectal cancer	22486879	CNVD
Breast cancer	17908964	CNVD
Colorectal cancer	20031965	CNVD
Hepatocellular carcinoma	16750200	CNVD
Ovarian cancer	17908964	CNVD
Ovarian cancer	20031965	CNVD
Prostate cancer	20031965	CNVD
Non-small cell lung cancer	17643093	CNVD
Prostate cancer	19242612	CNVD
Colorectal cancer	16774939	CNVD
Oral squamous cell carcinoma	21853135	CNVD
Multiple myeloma	17550852	CNVD
Glioblastoma multiforme	18628472	CNVD
Malignant melanoma	17260012	CNVD
Breast cancer	18698023	CNVD
Multiple myeloma	16461302	CNVD
Uveal melanoma	20484589	CNVD
head and neck squamous cell carcinoma	16740747	CNVD
Breast cancer	19181860	CNVD
Endometrial cancer	23636398	CNVD
Intracranial aneurysm	16715129	CNVD
Breast cancer	16397240	CNVD
Multiple myeloma	16616336	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Prostate cancer	22341455	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD
Lung adenocarcinoma	21935476	CNVD
Colorectal cancer	21645411	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119434800-119451800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:119442200-119449200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:119445200-119446800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:119445400-119448600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:119445600-119448000	Weak transcription	HUVEC	blood vessel
6	chr8:119445600-119450600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:119446000-119446800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr8:119446000-119447000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:119446000-119450000	Weak transcription	NHDF-Ad	bronchial
10	chr8:119446000-119450800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:119446200-119446800	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr8:119446200-119450400	Weak transcription	Osteobl	bone
13	chr8:119446400-119447000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:119446400-119449600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr8:119446400-119450400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:119446400-119451000	Weak transcription	NHLF	lung
17	chr8:119446800-119447000	ZNF genes & repeats	GM12878-XiMat	blood
18	chr8:119446800-119447600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr8:119446800-119452200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr8:119446800-119452200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr8:119447000-119447200	Weak transcription	GM12878-XiMat	blood
22	chr8:119447000-119452200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr8:119447200-119447400	Enhancers	GM12878-XiMat	blood
24	chr8:119447400-119450800	Weak transcription	GM12878-XiMat	blood
25	chr8:119447600-119448400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr8:119447800-119450200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr8:119448000-119449200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr8:119448000-119452000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr8:119448000-119456200	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links