Variant report

Variant	esv2489820
Chromosome Location	chr5:117873166-117881312
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTWD2-10	chr5:117874482-117874658	l_3002_chr5:117837955-117925717_heart

Extended variants
information (count: 624 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:624 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs73245502	chr5:117874484-117874485	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs72795546	chr5:117874496-117874497	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs567045061	chr5:117874500-117874501	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs142472240	chr5:117874507-117874508	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs373018788	chr5:117874509-117874510	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs112801954	chr5:117874511-117874512	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs376514208	chr5:117874512-117874513	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs374501253	chr5:117874513-117874514	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs535799541	chr5:117874516-117874517	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs367719513	chr5:117874518-117874519	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs112008805	chr5:117874520-117874521	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs111830513	chr5:117874522-117874523	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs371488777	chr5:117874528-117874529	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs376551507	chr5:117874530-117874531	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs368073650	chr5:117874537-117874538	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs371000008	chr5:117874538-117874539	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs371998002	chr5:117874541-117874542	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs78895345	chr5:117874542-117874543	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs76581111	chr5:117874543-117874544	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs376115642	chr5:117874544-117874545	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs62370361	chr5:117874549-117874550	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs376521954	chr5:117874550-117874551	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs77689631	chr5:117874553-117874554	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs199923164	chr5:117874554-117874555	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs575672766	chr5:117874556-117874557	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs370773062	chr5:117874557-117874558	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs13187133	chr5:117874558-117874559	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs62370362	chr5:117874562-117874563	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs74920094	chr5:117874564-117874565	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs369508142	chr5:117874566-117874567	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs373871358	chr5:117874570-117874571	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs372801769	chr5:117874575-117874576	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs62370363	chr5:117874577-117874578	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs375732344	chr5:117874578-117874579	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs116835648	chr5:117874579-117874580	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs367769773	chr5:117874584-117874585	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs373740130	chr5:117874585-117874586	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs369811656	chr5:117874591-117874592	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs372610374	chr5:117874597-117874598	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs530053661	chr5:117874599-117874600	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs376768416	chr5:117874600-117874601	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs113511369	chr5:117874612-117874613	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs112506197	chr5:117874615-117874616	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs540904096	chr5:117874624-117874625	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs544972623	chr5:117874626-117874627	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs562385725	chr5:117874629-117874630	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs558847298	chr5:117874630-117874631	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs149413274	chr5:117874634-117874635	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs572112295	chr5:117874635-117874636	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs541241139	chr5:117874636-117874637	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
Colorectal cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Ovarian cancer	21720365	CNVD
Salivary gland tumor	18059337	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	19377443	CNVD
Prostate cancer	16461572	CNVD
Myelofibrosis	22110671	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Glaucoma	21310917	CNVD
Glioblastoma multiforme	22286061	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Breast cancer	21509527	CNVD
Autism	22543975	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:117875200-117876000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:117875200-117876000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr5:117875400-117877200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr5:117875600-117878400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr5:117880400-117880800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:117880400-117881000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:117880800-117884200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:117881000-117884200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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