Variant report

Variant	esv2494179
Chromosome Location	chr9:9949836-9951224
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 114 )

Variant overlapped rSNPs/rCNVs (count:93 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs529045321	chr9:9949851-9949852	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs74491304	chr9:9949858-9949859	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs569176790	chr9:9949868-9949869	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs537811893	chr9:9949869-9949870	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs548988510	chr9:9949875-9949876	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs141570643	chr9:9949879-9949880	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs534327848	chr9:9949892-9949893	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs553929693	chr9:9949897-9949898	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs565687504	chr9:9949904-9949905	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs186561657	chr9:9949910-9949911	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs534866498	chr9:9949912-9949913	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs111606300	chr9:9949913-9949914	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs189780298	chr9:9949919-9949920	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs375202793	chr9:9949998-9949999	Weak transcription Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs150914039	chr9:9950027-9950028	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs560969385	chr9:9950042-9950043	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs138339871	chr9:9950043-9950044	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs182398386	chr9:9950047-9950048	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs569462248	chr9:9950048-9950049	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs537237442	chr9:9950050-9950051	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs556906903	chr9:9950056-9950057	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs149605867	chr9:9950066-9950067	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs186875660	chr9:9950088-9950089	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs10816261	chr9:9950092-9950093	Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs556713695	chr9:9950111-9950112	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs569166568	chr9:9950112-9950113	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs531681046	chr9:9950137-9950138	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs548264795	chr9:9950140-9950141	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs191265379	chr9:9950145-9950146	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs373189417	chr9:9950151-9950152	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs117623669	chr9:9950190-9950191	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs572111998	chr9:9950196-9950197	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs183015591	chr9:9950197-9950198	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs570615218	chr9:9950231-9950232	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs541291496	chr9:9950254-9950255	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs539603190	chr9:9950255-9950256	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs77451642	chr9:9950259-9950260	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs146126413	chr9:9950262-9950263	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs576659394	chr9:9950266-9950267	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs139841826	chr9:9950272-9950273	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs534062387	chr9:9950276-9950277	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs143321660	chr9:9950296-9950297	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs80019690	chr9:9950334-9950335	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs539850998	chr9:9950372-9950373	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs62536919	chr9:9950378-9950379	Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs146180863	chr9:9950381-9950382	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs377463310	chr9:9950398-9950399	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs115568182	chr9:9950434-9950435	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs543890573	chr9:9950441-9950442	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs369798536	chr9:9950444-9950445	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:114)

Disease	PMID	Source
abnormal development	18461090	CNVD
Disorders of sex development	21048976	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Lung cancer	20668451	CNVD
Schizophrenia	20838587	CNVD
Glioblastoma	18772890	CNVD
Glioblastoma multiforme	21390271	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	21764851	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16272173	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Gastric cancer	16891809	CNVD
Mental retardation	17847001	CNVD
Cutaneous squamous cell carcinomas	17420988	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Acute myeloid leukemia	21251322	CNVD
Lung adenocarcinoma	17982442	CNVD
Breast cancer	21611746	CNVD
Schizophrenia	23813976	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9949600-9950400	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr9:9949800-9950000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr9:9949800-9950400	Flanking Active TSS	Fetal Heart	heart
4	chr9:9950000-9950400	Enhancers	Left Ventricle	heart
5	chr9:9950000-9951400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:9950000-9952400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:9950400-9950800	Enhancers	Fetal Heart	heart
8	chr9:9950800-9951200	Flanking Active TSS	Fetal Heart	heart
9	chr9:9950800-9952600	Enhancers	Primary hematopoietic stem cells	blood
10	chr9:9951200-9954200	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links