Variant report

Variant	esv2505756
Chromosome Location	chr10:1634032-1635875
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:1621538..1624300-chr10:1635695..1637381,2	MCF-7	breast:

Extended variants
information (count: 188 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:188 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs77822792	chr10:1634037-1634038	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs7896504	chr10:1634042-1634043	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs139475898	chr10:1634043-1634044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs556123235	chr10:1634120-1634121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs576168025	chr10:1634126-1634127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs541785183	chr10:1634130-1634131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs184466060	chr10:1634155-1634156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs369767384	chr10:1634163-1634164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs572336167	chr10:1634166-1634167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs540640820	chr10:1634167-1634168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs560489683	chr10:1634204-1634205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs149674696	chr10:1634215-1634216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs145503092	chr10:1634248-1634249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs562970476	chr10:1634249-1634250	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs531956206	chr10:1634259-1634260	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs548342033	chr10:1634281-1634282	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs148860310	chr10:1634295-1634296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs527934748	chr10:1634305-1634306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs75636934	chr10:1634331-1634332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs80055743	chr10:1634382-1634383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs539191236	chr10:1634390-1634391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs556200154	chr10:1634415-1634416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs535424448	chr10:1634419-1634420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs569621763	chr10:1634420-1634421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs555263849	chr10:1634423-1634424	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs2813396	chr10:1634430-1634431	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
27	rs555559377	chr10:1634436-1634437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs200302702	chr10:1634448-1634449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs572416908	chr10:1634455-1634456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs541323978	chr10:1634456-1634457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs554242144	chr10:1634462-1634463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs201507111	chr10:1634466-1634467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs577146230	chr10:1634467-1634468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs188828406	chr10:1634471-1634472	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs181275722	chr10:1634472-1634473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs531669757	chr10:1634496-1634497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs542018790	chr10:1634502-1634503	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs10903504	chr10:1634511-1634512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs199651146	chr10:1634512-1634513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs71500146	chr10:1634515-1634516	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs561945539	chr10:1634516-1634517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs112742867	chr10:1634518-1634519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs10903505	chr10:1634519-1634520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs10219018	chr10:1634522-1634523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs10903506	chr10:1634530-1634531	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs113098659	chr10:1634535-1634536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs528021699	chr10:1634538-1634539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs12258188	chr10:1634559-1634560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs570382819	chr10:1634567-1634568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs7897168	chr10:1634576-1634577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Autism	22543975	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1634000-1637000	Weak transcription	Fetal Brain Male	brain
2	chr10:1634600-1648200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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