Variant report

Variant	esv2531453
Chromosome Location	chr10:38891291-38891292
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:62)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:38891288-38891338	AG10803	skin:	n/a
2	chr10:38891288-38891338	AG10803	skin:	n/a
3	chr10:38891288-38891338	BE2_C	brain:	n/a
4	chr10:38891288-38891338	NT2-D1	testis:	n/a
5	chr10:38891288-38891338	HCF	heart:	n/a
6	chr10:38891288-38891338	GM12891	blood:	n/a
7	chr10:38891288-38891338	SK-N-MC	brain:	n/a
8	chr10:38891288-38891338	T-47D	breast:	n/a
9	chr10:38891288-38891338	RPTEC	kidney:	n/a
10	chr10:38891288-38891338	SK-N-SH_RA	brain:	n/a
11	chr10:38891288-38891338	MCF10A-Er-Src	breast:	n/a
12	chr10:38891288-38891338	ECC-1	luminal epithelium:	n/a
13	chr10:38891288-38891338	PANC-1	pancreas:	n/a
14	chr10:38891288-38891338	AoSMC	blood vessel:	n/a
15	chr10:38891288-38891338	GM06990	blood:	n/a
16	chr10:38891288-38891338	Caco-2	colon:	n/a
17	chr10:38891288-38891338	HL-60	blood:	n/a
18	chr10:38891288-38891338	HPAEpiC	pulmonary alveolar:	n/a
19	chr10:38891288-38891338	HCPEpiC	choroid plexus:	n/a
20	chr10:38891288-38891338	PrEC	prostate:	n/a
21	chr10:38891288-38891338	NHDF-neo	bronchial:	n/a
22	chr10:38891288-38891338	HCT-116	colon:	n/a
23	chr10:38891288-38891338	BJ	skin:	n/a
24	chr10:38891288-38891338	GM12892	blood:	n/a
25	chr10:38891288-38891338	Hela-S3	cervix:	n/a
26	chr10:38891288-38891338	Jurkat	blood:	n/a
27	chr10:38891288-38891338	HIPEpiC	eye:	n/a
28	chr10:38891288-38891338	U87	brain:	n/a
29	chr10:38891288-38891338	HRE	kidney:	n/a
30	chr10:38891288-38891338	GM19239	blood:	n/a
31	chr10:38891288-38891338	LNCaP	prostate:	n/a
32	chr10:38891288-38891338	CMK	blood:	n/a
33	chr10:38891288-38891338	A549	lung:	n/a
34	chr10:38891288-38891338	AG04449	skin:	fetal
35	chr10:38891288-38891338	K562	blood:	n/a
36	chr10:38891288-38891338	SKMC	muscle:	n/a
37	chr10:38891288-38891338	ovcar-3	ovarian:	n/a
38	chr10:38891288-38891338	PFSK-1	brain:	n/a
39	chr10:38891288-38891338	HUVEC	blood vessel:	n/a
40	chr10:38891288-38891338	AG09309	skin:	n/a
41	chr10:38891288-38891338	MCF-7	breast:	n/a
42	chr10:38891288-38891338	HAEpiC	amniotic membrane:	n/a
43	chr10:38891288-38891338	HNPCEpiC	eye:	n/a
44	chr10:38891288-38891338	HEK293	kidney:	embryo
45	chr10:38891288-38891338	AG09319	gingival:	n/a
46	chr10:38891288-38891338	SAEC	small airway:	n/a
47	chr10:38891288-38891338	HEEpiC	esophagus:	n/a
48	chr10:38891288-38891338	NH-A	brain:	n/a
49	chr10:38891288-38891338	SK-N-SH	brain:	n/a
50	chr10:38891288-38891338	GM12878	blood:	n/a

No data

Variant related genes	Relation type
ABCD1P2	CpG island

Extended variants
information (count: 1 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200688624	chr10:38891291-38891292	Inactive region	CpG island	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links