Variant report

Variant	esv2536763
Chromosome Location	chr10:110606803-110608047
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr10:110607616-110608123	SK-N-SH	brain:	n/a	n/a
2	GATA3	chr10:110607635-110608293	SK-N-SH	brain:	n/a	n/a
3	JUN	chr10:110607856-110608094	HepG2	liver:	n/a	chr10:110607958-110607971
4	JUND	chr10:110607799-110608134	HepG2	liver:	n/a	n/a
5	STAT3	chr10:110607928-110608076	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr10:110607947-110608018	MCF10A-Er-Src	breast:	n/a	n/a
7	TCF12	chr10:110607618-110608169	SK-N-SH	brain:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ADD3-11	chr10:110607944-110609319	NONHSAT016310

Variant related genes	Relation type
MAPKAPK5P1	TF binding region

Extended variants
information (count: 22 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs540790668	chr10:110607626-110607627	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs564174419	chr10:110607645-110607646	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs532603622	chr10:110607646-110607647	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs552689460	chr10:110607657-110607658	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs190760564	chr10:110607691-110607692	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs182646481	chr10:110607693-110607694	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs548880679	chr10:110607695-110607696	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs534340813	chr10:110607733-110607734	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs571085769	chr10:110607740-110607741	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs527795444	chr10:110607741-110607742	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs570878700	chr10:110607758-110607759	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs539548918	chr10:110607818-110607819	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs556364185	chr10:110607866-110607867	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs575819083	chr10:110607872-110607873	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs534908766	chr10:110607892-110607893	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs17698968	chr10:110607899-110607900	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs186749161	chr10:110607903-110607904	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs190594058	chr10:110607922-110607923	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs182883133	chr10:110607928-110607929	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs564026081	chr10:110607977-110607978	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs373517324	chr10:110607999-110608000	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs188644968	chr10:110608006-110608007	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
renal hypoplasia	20603712	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Myxofibrosarcoma	16751306	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Multiple myeloma	16616336	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21364760	CNVD
Barrett''s syndrome	19417022	CNVD
Sezary syndrome	18413736	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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