Variant report

Variant	esv2544693
Chromosome Location	chr7:58042491-58045429
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:94030168..94030688-chr7:58043283..58043804,2	MCF-7	breast:

Extended variants
information (count: 231 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:231 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs71527721	chr7:58042497-58042498	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs71565848	chr7:58042513-58042514	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs80026373	chr7:58042517-58042518	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs533227343	chr7:58042534-58042535	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs551391240	chr7:58042535-58042536	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs569701873	chr7:58042542-58042543	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs201510110	chr7:58042548-58042549	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs549408944	chr7:58042551-58042552	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs200972355	chr7:58042558-58042559	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs181750647	chr7:58042560-58042561	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs112390412	chr7:58042569-58042570	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs567907946	chr7:58042570-58042571	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs113538486	chr7:58042583-58042584	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs534921058	chr7:58042593-58042594	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs376482054	chr7:58042611-58042612	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs112746085	chr7:58042612-58042613	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs571281588	chr7:58042619-58042620	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs572020366	chr7:58042641-58042642	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs111995545	chr7:58042660-58042661	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs111675412	chr7:58042668-58042669	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs201762825	chr7:58042685-58042686	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs200110157	chr7:58042699-58042700	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs200868803	chr7:58042700-58042701	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs557034415	chr7:58042705-58042706	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs62459536	chr7:58042708-58042709	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs542595921	chr7:58042711-58042712	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs113232795	chr7:58042718-58042719	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs200065950	chr7:58042726-58042727	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs113908146	chr7:58042729-58042730	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs552969598	chr7:58042736-58042737	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs201383676	chr7:58042741-58042742	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs113228361	chr7:58042744-58042745	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs189603594	chr7:58042773-58042774	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs201982172	chr7:58042798-58042799	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs540077545	chr7:58042803-58042804	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs113706824	chr7:58042812-58042813	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs565070976	chr7:58042818-58042819	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs533286524	chr7:58042819-58042820	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs200194894	chr7:58042823-58042824	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs563389660	chr7:58042827-58042828	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs530817683	chr7:58042832-58042833	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs200851294	chr7:58042833-58042834	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs113606730	chr7:58042843-58042844	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs567884961	chr7:58042845-58042846	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs76616109	chr7:58042859-58042860	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs367772296	chr7:58042871-58042872	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs374299341	chr7:58042872-58042873	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs377098813	chr7:58042876-58042877	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs528760552	chr7:58042877-58042878	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs546910475	chr7:58042886-58042887	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Wilms tumour	21544195	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
head and neck squamous cell carcinoma	17671120	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:58026400-58042800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr7:58026400-58043000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:58032400-58043000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
4	chr7:58041400-58043000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr7:58041800-58042600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
6	chr7:58041800-58042800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr7:58042000-58042600	ZNF genes & repeats	HUVEC	blood vessel
8	chr7:58042200-58042600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:58042400-58042600	ZNF genes & repeats	Brain Substantia Nigra	brain
10	chr7:58042400-58042800	ZNF genes & repeats	Colon Smooth Muscle	Colon
11	chr7:58043000-58044800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:58043000-58044800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:58043000-58044800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:58044800-58054200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
15	chr7:58044800-58054400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:58044800-58054400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
17	chr7:58045000-58054200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links