Variant report

Variant	esv2548579
Chromosome Location	chr8:1509621-1511934
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 224 )
Associated
traits (count: 118 )

Variant overlapped rSNPs/rCNVs (count:224 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs369340806	chr8:1509635-1509636	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs113368685	chr8:1509648-1509649	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs144304045	chr8:1509664-1509665	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs61387730	chr8:1509682-1509683	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs148711488	chr8:1509733-1509734	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs113671778	chr8:1509734-1509735	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs572277640	chr8:1509747-1509748	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs189418201	chr8:1509761-1509762	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs560456744	chr8:1509763-1509764	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs141441245	chr8:1509783-1509784	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs369003201	chr8:1509811-1509812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs549115980	chr8:1509815-1509816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs115696204	chr8:1509836-1509837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs201820110	chr8:1509843-1509844	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs28580355	chr8:1509853-1509854	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs150902488	chr8:1509859-1509860	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs375255189	chr8:1509869-1509870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs192898919	chr8:1509873-1509874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs530810349	chr8:1509883-1509884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs2906580	chr8:1509892-1509893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs185366889	chr8:1509898-1509899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs2906581	chr8:1509902-1509903	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs547761613	chr8:1509906-1509907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs2956903	chr8:1509909-1509910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs146127773	chr8:1509913-1509914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs113124157	chr8:1509917-1509918	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs199859816	chr8:1509923-1509924	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs535850214	chr8:1509934-1509935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs373198814	chr8:1509939-1509940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs80165929	chr8:1509942-1509943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs377279358	chr8:1509949-1509950	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs370749833	chr8:1509963-1509964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs374874007	chr8:1509971-1509972	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs11990347	chr8:1509974-1509975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs556326734	chr8:1509978-1509979	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs11990348	chr8:1509982-1509983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs201203698	chr8:1510002-1510003	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs190165549	chr8:1510010-1510011	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs11993643	chr8:1510018-1510019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs182033615	chr8:1510049-1510050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs373598770	chr8:1510051-1510052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs13268003	chr8:1510057-1510058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs576170874	chr8:1510061-1510062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs149686261	chr8:1510077-1510078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs538860039	chr8:1510090-1510091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs531051678	chr8:1510091-1510092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs546373526	chr8:1510096-1510097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs188376555	chr8:1510097-1510098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs368709051	chr8:1510104-1510105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs572260592	chr8:1510116-1510117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:118)

Disease	PMID	Source
Ovarian cancer	21720365	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Cancer	18840272	CNVD
Pilocytic astrocytoma	18622384	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
abnormal development	18461090	CNVD
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	20729466	CNVD
Ductal carcinoma	22052326	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Epilepsy	22083797	CNVD
Acute myeloid leukemia	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Autism	20531469	CNVD
Breast cancer	20932292	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Ependymoma	20639864	CNVD
Ovarian cancer	22355333	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1506000-1516000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:1507200-1509800	Enhancers	Fetal Brain Male	brain
3	chr8:1507200-1512000	Weak transcription	Fetal Brain Female	brain
4	chr8:1509400-1509800	Enhancers	Spleen	Spleen
5	chr8:1509800-1511000	Weak transcription	Fetal Brain Male	brain
6	chr8:1511000-1514000	Enhancers	Fetal Brain Male	brain
7	chr8:1511400-1512200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:1511600-1513000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:1511600-1513000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:1511600-1513000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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