Variant report

Variant	esv2564352
Chromosome Location	chr10:61549658-61549658
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200432382	chr10:61549658-61549659	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Metanephric adenoma	20802469	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Urothelial carcinoma	21177765	CNVD
abnormal development	18461090	CNVD
Medulloblastoma	16783165	CNVD
Myelofibrosis	22110671	CNVD
Epilepsy	20643615	CNVD
Neurodevelopmental disorder	22521361	CNVD
Breast cancer	21509527	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61537600-61582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:61540000-61551600	Weak transcription	Fetal Lung	lung
3	chr10:61540200-61550200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:61540200-61550400	Weak transcription	NH-A	brain
5	chr10:61540200-61551600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr10:61540200-61551600	Weak transcription	Brain Anterior Caudate	brain
7	chr10:61540200-61551600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:61540200-61551800	Weak transcription	Brain Germinal Matrix	brain
9	chr10:61540200-61551800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:61540200-61552200	Weak transcription	Fetal Stomach	stomach
11	chr10:61540200-61562800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:61540800-61551600	Weak transcription	HSMM	muscle
13	chr10:61541000-61550400	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:61541400-61551400	Weak transcription	Hela-S3	cervix
15	chr10:61541400-61551400	Weak transcription	HSMMtube	muscle
16	chr10:61544200-61551400	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:61544400-61550400	Weak transcription	Primary T cells from cord blood	blood
18	chr10:61544600-61550400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr10:61544800-61550200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:61545000-61552400	Weak transcription	Colonic Mucosa	Colon
21	chr10:61545200-61563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr10:61545600-61551800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:61545800-61563200	Weak transcription	Spleen	Spleen
24	chr10:61546200-61550000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:61546200-61551400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:61546200-61551400	Weak transcription	A549	lung
27	chr10:61546200-61552400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:61546200-61553800	Weak transcription	Stomach Mucosa	stomach
29	chr10:61546400-61550200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr10:61546600-61552400	Weak transcription	Pancreas	Pancrea
31	chr10:61546800-61550000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr10:61546800-61550200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:61546800-61550400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr10:61546800-61550400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr10:61546800-61550400	Weak transcription	Fetal Thymus	thymus
36	chr10:61546800-61551000	Weak transcription	HMEC	breast
37	chr10:61546800-61552000	Weak transcription	Fetal Brain Female	brain
38	chr10:61546800-61552200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:61547000-61550200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr10:61547000-61552000	Weak transcription	HUVEC	blood vessel
41	chr10:61547200-61549800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr10:61547200-61550400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:61547200-61551800	Weak transcription	Left Ventricle	heart
44	chr10:61547200-61552400	Weak transcription	Aorta	Aorta
45	chr10:61547200-61552400	Weak transcription	Gastric	stomach
46	chr10:61547200-61554800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:61547400-61550200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr10:61547400-61551400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:61547400-61551800	Weak transcription	Esophagus	oesophagus
50	chr10:61547400-61552400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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