Variant report

Variant	esv2574880
Chromosome Location	chr6:11902568-11904153
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11900471..11902675-chr6:11931742..11933826,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 99 )

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6937349	chr6:11902591-11902592	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs539375603	chr6:11902592-11902593	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs185740404	chr6:11902639-11902640	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs6909423	chr6:11902649-11902650	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs6937513	chr6:11902681-11902682	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs545202248	chr6:11902682-11902683	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs537936278	chr6:11902683-11902684	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs575475735	chr6:11902698-11902699	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs565081926	chr6:11902714-11902715	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs6910727	chr6:11902727-11902728	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs6915058	chr6:11902750-11902751	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs114131830	chr6:11902765-11902766	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs6941984	chr6:11902804-11902805	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs560426008	chr6:11902852-11902853	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs190401278	chr6:11903031-11903032	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs10701262	chr6:11903084-11903085	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs372472684	chr6:11903085-11903086	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs57429851	chr6:11903086-11903087	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs200161674	chr6:11903088-11903089	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs549201742	chr6:11903098-11903099	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs566206506	chr6:11903120-11903121	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs386697162	chr6:11903125-11903126	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs73721880	chr6:11903126-11903127	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs551663388	chr6:11903135-11903136	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs112125879	chr6:11903174-11903175	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:99)

Disease	PMID	Source
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	17603634	CNVD
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	22495311	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
small cell lung cancer	20016488	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Osteosarcoma	16790693	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Ovarian cancer	21720365	CNVD
Cancer	21183584	CNVD
Acute myeloid leukemia	18000384	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21364760	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Bladder cancer	21909424	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Burkitt''s lymphoma	19759907	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Metastatic melanoma	18483359	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11901400-11903000	ZNF genes & repeats	K562	blood
2	chr6:11901600-11902600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:11901800-11903200	Enhancers	Primary T cells from cord blood	blood
4	chr6:11902000-11902800	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr6:11902000-11903200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr6:11902200-11902600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:11902200-11902600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:11902200-11903000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr6:11902400-11903000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr6:11902600-11903000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:11902600-11903000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr6:11902800-11903000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:11903000-11903200	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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