Variant report

Variant	esv2631522
Chromosome Location	chr6:58779463-58779802
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:35488627..35490321-chr6:58777408..58779728,2	MCF-7	breast:
2	chr1:9910788..9913768-chr6:58778329..58780695,2	MCF-7	breast:
3	chr6:27776232..27779951-chr6:58776955..58780402,3	MCF-7	breast:
4	chr17:57930610..57932922-chr6:58777438..58780644,3	MCF-7	breast:
5	chr2:220113661..220115481-chr6:58779094..58780648,2	MCF-7	breast:
6	chr17:57914586..57918340-chr6:58776843..58780440,4	MCF-7	breast:
7	chr20:60960325..60962671-chr6:58777619..58780127,2	MCF-7	breast:
8	chr6:58777416..58779792-chr6:77801547..77804072,2	MCF-7	breast:
9	chr14:69258719..69262658-chr6:58778237..58780699,3	MCF-7	breast:
10	chr6:57252756..57255373-chr6:58778906..58780647,2	MCF-7	breast:
11	chr13:111364963..111367929-chr6:58777252..58779728,2	MCF-7	breast:
12	chr1:121484489..121485231-chr6:58779321..58780005,2	MCF-7	breast:
13	chr6:58777751..58780199-chr8:128748477..128750306,2	MCF-7	breast:
14	chr6:58777993..58779849-chr8:94211437..94213575,2	MCF-7	breast:
15	chr20:45984506..45987023-chr6:58776231..58780015,3	MCF-7	breast:
16	chr11:62597650..62599373-chr6:58779077..58780591,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000171858	chromatin interactions
ENSG00000203813	chromatin interactions
ENSG00000062716	chromatin interactions
ENSG00000185650	chromatin interactions
ENSG00000212017	chromatin interactions
ENSG00000089351	chromatin interactions
ENSG00000101040	chromatin interactions
ENSG00000134905	chromatin interactions
ENSG00000136997	chromatin interactions
ENSG00000153487	chromatin interactions

Extended variants
information (count: 191 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:191 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs55766722	chr6:58779463-58779464	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
2	rs59751353	chr6:58779464-58779465	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
3	rs58381332	chr6:58779465-58779466	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
4	rs9767599	chr6:58779466-58779467	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
5	rs6651021	chr6:58779468-58779469	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
6	rs9391574	chr6:58779469-58779470	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
7	rs9500625	chr6:58779470-58779471	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
8	rs151085512	chr6:58779471-58779472	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
9	rs4361642	chr6:58779472-58779473	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
10	rs4928418	chr6:58779473-58779474	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
11	rs9500628	chr6:58779476-58779477	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
12	rs28854511	chr6:58779477-58779478	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
13	rs9391575	chr6:58779479-58779480	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
14	rs149517928	chr6:58779480-58779481	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
15	rs144128274	chr6:58779483-58779484	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
16	rs142108766	chr6:58779485-58779486	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
17	rs28805023	chr6:58779489-58779490	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
18	rs138685099	chr6:58779490-58779491	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
19	rs28869521	chr6:58779491-58779492	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
20	rs28857632	chr6:58779494-58779495	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
21	rs9391375	chr6:58779496-58779497	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
22	rs113397686	chr6:58779497-58779498	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
23	rs146773547	chr6:58779498-58779499	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
24	rs6651022	chr6:58779499-58779500	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
25	rs59796814	chr6:58779500-58779501	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
26	rs28897409	chr6:58779501-58779502	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
27	rs9500241	chr6:58779502-58779503	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
28	rs28796121	chr6:58779503-58779504	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
29	rs9689300	chr6:58779504-58779505	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
30	rs141709099	chr6:58779510-58779511	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
31	rs4594980	chr6:58779511-58779512	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
32	rs28759995	chr6:58779512-58779513	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
33	rs142087266	chr6:58779513-58779514	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
34	rs139528906	chr6:58779514-58779515	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
35	rs28860241	chr6:58779516-58779517	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
36	rs151069579	chr6:58779517-58779518	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
37	rs144214471	chr6:58779522-58779523	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
38	rs145381914	chr6:58779523-58779524	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
39	rs28846710	chr6:58779524-58779525	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
40	rs142399672	chr6:58779525-58779526	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
41	rs151312928	chr6:58779526-58779527	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
42	rs142044144	chr6:58779527-58779528	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
43	rs12215424	chr6:58779528-58779529	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
44	rs58948275	chr6:58779529-58779530	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
45	rs28750532	chr6:58779530-58779531	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
46	rs141034321	chr6:58779531-58779532	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
47	rs28875815	chr6:58779533-58779534	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
48	rs150297377	chr6:58779534-58779535	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
49	rs150255347	chr6:58779535-58779536	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
50	rs138064284	chr6:58779537-58779538	Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Systemic lupus erythematosus	17503323	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	18458336	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:58779400-58779800	Weak transcription	Right Ventricle	heart
2	chr6:58779400-58780000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:58779400-58780000	Active TSS	HSMMtube	muscle
4	chr6:58779400-58780000	ZNF genes & repeats	NH-A	brain

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