Variant report

Variant	esv2635100
Chromosome Location	chr6:57283956-57289549
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:57287892..57290689-chr6:57302857..57304913,2	K562	blood:
2	chr6:57285506..57287843-chr6:57289585..57292088,2	MCF-7	breast:

Extended variants
information (count: 195 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:195 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12212184	chr6:57283997-57283998	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs12212301	chr6:57284057-57284058	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs71299591	chr6:57284077-57284078	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs12212200	chr6:57284078-57284079	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs12212357	chr6:57284129-57284130	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs371763688	chr6:57284135-57284136	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs9296877	chr6:57284178-57284179	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs542189638	chr6:57284184-57284185	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs9296878	chr6:57284291-57284292	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs560725766	chr6:57284293-57284294	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs531593000	chr6:57284322-57284323	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs386701518	chr6:57284323-57284324	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs543348030	chr6:57284324-57284325	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs565212461	chr6:57284330-57284331	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs7764802	chr6:57284371-57284372	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs113455297	chr6:57284383-57284384	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs373207949	chr6:57284394-57284395	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs532190815	chr6:57284426-57284427	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs112407125	chr6:57284428-57284429	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs547626604	chr6:57284430-57284431	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs7764960	chr6:57284440-57284441	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs530218771	chr6:57284441-57284442	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs548559173	chr6:57284450-57284451	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs7764986	chr6:57284487-57284488	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs569943517	chr6:57284579-57284580	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs537502434	chr6:57284597-57284598	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs371646868	chr6:57284673-57284674	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs7765456	chr6:57284697-57284698	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs571159012	chr6:57284703-57284704	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs534856534	chr6:57284704-57284705	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs7765059	chr6:57284738-57284739	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs571761995	chr6:57284739-57284740	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs535950776	chr6:57284751-57284752	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs554695679	chr6:57284764-57284765	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs575925529	chr6:57284779-57284780	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs543439103	chr6:57284785-57284786	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs33966571	chr6:57284789-57284790	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs62401677	chr6:57284847-57284848	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs62401678	chr6:57284861-57284862	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs564996927	chr6:57284867-57284868	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs200451594	chr6:57284889-57284890	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs62401679	chr6:57284926-57284927	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs147819453	chr6:57285039-57285040	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs553321216	chr6:57285074-57285075	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs572834500	chr6:57285082-57285083	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs560604646	chr6:57285114-57285115	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs368755673	chr6:57285115-57285116	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs541178121	chr6:57285116-57285117	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs141346029	chr6:57285117-57285118	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs150368039	chr6:57285131-57285132	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21858162	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
small cell lung cancer	20016488	CNVD
Gastric cancer	17908304	CNVD
Neuroblastoma	16790693	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Lung cancer	18438408	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Systemic lupus erythematosus	17503323	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	16608533	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Glioblastoma multiforme	22286061	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:161 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:57268400-57288400	Weak transcription	NHLF	lung
2	chr6:57273000-57284000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:57273000-57285600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:57273200-57287600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:57273600-57284000	Weak transcription	Gastric	stomach
6	chr6:57274600-57284000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:57276400-57284000	Weak transcription	Spleen	Spleen
8	chr6:57276400-57284200	Weak transcription	Pancreas	Pancrea
9	chr6:57281000-57284000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:57281200-57284200	Weak transcription	HSMM	muscle
11	chr6:57281200-57287600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:57281400-57284200	Weak transcription	Psoas Muscle	Psoas
13	chr6:57281400-57284600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr6:57281400-57285400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:57281400-57286000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:57281400-57286400	Weak transcription	Aorta	Aorta
17	chr6:57281400-57287600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:57281600-57285400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:57281600-57285400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr6:57281600-57297000	Weak transcription	Primary B cells from cord blood	blood
21	chr6:57281600-57297600	Weak transcription	Dnd41	blood
22	chr6:57281800-57284000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:57282200-57285400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:57282800-57285400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:57283000-57295800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:57283400-57284200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:57283400-57296400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr6:57283600-57284400	ZNF genes & repeats	NHDF-Ad	bronchial
29	chr6:57283800-57284000	Strong transcription	Thymus	Thymus
30	chr6:57283800-57284400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr6:57283800-57284400	Enhancers	Hela-S3	cervix
32	chr6:57283800-57284600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:57284000-57284200	Enhancers	H9 Cell Line	embryonic stem cell
34	chr6:57284000-57284200	Enhancers	Esophagus	oesophagus
35	chr6:57284000-57284400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:57284000-57284400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
37	chr6:57284000-57284400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:57284000-57284400	Enhancers	Gastric	stomach
39	chr6:57284000-57284400	Enhancers	Ovary	ovary
40	chr6:57284000-57284400	Enhancers	Right Atrium	heart
41	chr6:57284000-57284400	ZNF genes & repeats	Thymus	Thymus
42	chr6:57284000-57284400	Enhancers	Spleen	Spleen
43	chr6:57284000-57284400	ZNF genes & repeats	NHEK	skin
44	chr6:57284000-57284600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr6:57284000-57284800	Enhancers	HMEC	breast
46	chr6:57284200-57284400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:57284200-57284400	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr6:57284200-57284400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr6:57284200-57284400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr6:57284200-57284400	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links