Variant report
Variant | esv2750885 |
---|---|
Chromosome Location | chr10:19407891-19836364 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1380)
- CpG islands (count:245)
- Chromatin interactive region (count:61)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr10:19674771-19675173 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr10:19603428-19603923 | HepG2 | liver: | n/a | n/a |
3 | ATF1 | chr10:19798150-19798313 | K562 | blood: | n/a | n/a |
4 | ATF1 | chr10:19792017-19792188 | K562 | blood: | n/a | n/a |
5 | ATF2 | chr10:19408000-19408486 | H1-hESC | embryonic stem cell: | n/a | n/a |
6 | BACH1 | chr10:19523717-19523813 | H1-hESC | embryonic stem cell: | n/a | n/a |
7 | BACH1 | chr10:19777970-19778068 | H1-hESC | embryonic stem cell: | n/a | n/a |
8 | BACH1 | chr10:19457572-19457738 | H1-hESC | embryonic stem cell: | n/a | n/a |
9 | BACH1 | chr10:19591069-19591317 | K562 | blood: | n/a | n/a |
10 | BACH1 | chr10:19590996-19591316 | H1-hESC | embryonic stem cell: | n/a | n/a |
11 | BACH1 | chr10:19836112-19836113 | K562 | blood: | n/a | n/a |
12 | BATF | chr10:19807634-19807887 | GM12878 | blood: | n/a | chr10:19807691-19807699 |
13 | BCL11A | chr10:19807647-19807851 | GM12878 | blood: | n/a | n/a |
14 | BCL11A | chr10:19431852-19432069 | GM12878 | blood: | n/a | n/a |
15 | BCL11A | chr10:19432092-19432361 | GM12878 | blood: | n/a | n/a |
16 | BHLHE40 | chr10:19458718-19458920 | HepG2 | liver: | n/a | n/a |
17 | BHLHE40 | chr10:19436379-19436415 | GM12878 | blood: | n/a | n/a |
18 | BRCA1 | chr10:19676411-19676542 | Hela-S3 | cervix: | n/a | n/a |
19 | CCNT2 | chr10:19695758-19696077 | K562 | blood: | n/a | n/a |
20 | CEBPB | chr10:19710723-19711033 | HepG2 | liver: | n/a | chr10:19710892-19710903 |
21 | CEBPB | chr10:19630705-19631211 | Hela-S3 | cervix: | n/a | chr10:19631083-19631092 chr10:19631083-19631092 |
22 | CEBPB | chr10:19825290-19825489 | H1-hESC | embryonic stem cell: | n/a | n/a |
23 | CEBPB | chr10:19825267-19825560 | IMR90 | lung: | n/a | n/a |
24 | CEBPB | chr10:19409460-19409800 | HepG2 | liver: | n/a | chr10:19409626-19409637 |
25 | CEBPB | chr10:19835154-19835476 | HepG2 | liver: | n/a | chr10:19835318-19835331 chr10:19835318-19835329 chr10:19835320-19835331 chr10:19835318-19835331 |
26 | CEBPB | chr10:19617561-19617954 | Hela-S3 | cervix: | n/a | chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 |
27 | CEBPB | chr10:19498249-19498750 | MCF-7 | breast: | n/a | n/a |
28 | CEBPB | chr10:19710815-19710994 | K562 | blood: | n/a | chr10:19710892-19710903 |
29 | CEBPB | chr10:19409461-19409762 | K562 | blood: | n/a | chr10:19409626-19409637 |
30 | CEBPB | chr10:19770776-19771101 | HepG2 | liver: | n/a | n/a |
31 | CEBPB | chr10:19721069-19721224 | H1-hESC | embryonic stem cell: | n/a | n/a |
32 | CEBPB | chr10:19721890-19721917 | H1-hESC | embryonic stem cell: | n/a | chr10:19721890-19721907 |
33 | CEBPB | chr10:19737930-19737982 | K562 | blood: | n/a | chr10:19737941-19737954 chr10:19737943-19737952 chr10:19737943-19737954 |
34 | CEBPB | chr10:19617015-19617159 | IMR90 | lung: | n/a | chr10:19617045-19617054 chr10:19617043-19617054 |
35 | CEBPB | chr10:19825248-19825603 | HepG2 | liver: | n/a | n/a |
36 | CEBPB | chr10:19617601-19617911 | A549 | lung: | n/a | chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 |
37 | CEBPB | chr10:19758531-19758806 | IMR90 | lung: | n/a | chr10:19758672-19758683 |
38 | CEBPB | chr10:19835213-19835386 | H1-hESC | embryonic stem cell: | n/a | chr10:19835318-19835331 chr10:19835318-19835329 chr10:19835320-19835331 chr10:19835318-19835331 |
39 | CEBPB | chr10:19481079-19481325 | HepG2 | liver: | n/a | chr10:19481196-19481207 |
40 | CEBPB | chr10:19409445-19409793 | A549 | lung: | n/a | chr10:19409626-19409637 |
41 | CEBPB | chr10:19787938-19788228 | IMR90 | lung: | n/a | chr10:19788093-19788106 chr10:19788094-19788105 chr10:19788093-19788106 chr10:19788093-19788104 chr10:19788093-19788106 |
42 | CEBPB | chr10:19589028-19589280 | HepG2 | liver: | n/a | n/a |
43 | CEBPB | chr10:19758519-19758826 | HepG2 | liver: | n/a | chr10:19758672-19758683 |
44 | CEBPB | chr10:19674826-19675024 | HepG2 | liver: | n/a | chr10:19674953-19674964 |
45 | CEBPB | chr10:19648171-19648434 | HepG2 | liver: | n/a | chr10:19648298-19648311 chr10:19648299-19648310 |
46 | CEBPB | chr10:19621286-19621558 | H1-hESC | embryonic stem cell: | n/a | chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428 |
47 | CEBPB | chr10:19621293-19621574 | ECC-1 | luminal epithelium: | n/a | chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428 |
48 | CEBPB | chr10:19481040-19481301 | IMR90 | lung: | n/a | chr10:19481196-19481207 |
49 | CEBPB | chr10:19621253-19621585 | MCF-7 | breast: | n/a | chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428 |
50 | CEBPB | chr10:19498334-19498682 | Hela-S3 | cervix: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:19540759-19540809 | PrEC | prostate: | n/a |
2 | chr10:19540759-19540809 | PrEC | prostate: | n/a |
3 | chr10:19705290-19705340 | HCPEpiC | choroid plexus: | n/a |
4 | chr10:19778008-19778058 | HPAEpiC | pulmonary alveolar: | n/a |
5 | chr10:19705290-19705340 | HMEC | breast: | n/a |
6 | chr10:19705290-19705340 | HNPCEpiC | eye: | n/a |
7 | chr10:19408880-19408930 | BJ | skin: | n/a |
8 | chr10:19408880-19408930 | HAEpiC | amniotic membrane: | n/a |
9 | chr10:19778008-19778058 | HepG2 | liver: | n/a |
10 | chr10:19778008-19778058 | MCF10A-Er-Src | breast: | n/a |
11 | chr10:19408880-19408930 | MCF10A-Er-Src | breast: | n/a |
12 | chr10:19408880-19408930 | PANC-1 | pancreas: | n/a |
13 | chr10:19778008-19778058 | SK-N-MC | brain: | n/a |
14 | chr10:19778008-19778058 | HRE | kidney: | n/a |
15 | chr10:19408880-19408930 | U87 | brain: | n/a |
16 | chr10:19408880-19408930 | A549 | lung: | n/a |
17 | chr10:19705290-19705340 | BJ | skin: | n/a |
18 | chr10:19778008-19778058 | GM06990 | blood: | n/a |
19 | chr10:19778008-19778058 | HRCEpiC | kidney: | n/a |
20 | chr10:19408880-19408930 | HEEpiC | esophagus: | n/a |
21 | chr10:19778008-19778058 | HRPEpiC | eye: | n/a |
22 | chr10:19778008-19778058 | HUVEC | blood vessel: | n/a |
23 | chr10:19778008-19778058 | A549 | lung: | n/a |
24 | chr10:19540759-19540809 | IMR90 | lung: | fetal |
25 | chr10:19778008-19778058 | K562 | blood: | n/a |
26 | chr10:19540759-19540809 | U87 | brain: | n/a |
27 | chr10:19540759-19540809 | HNPCEpiC | eye: | n/a |
28 | chr10:19778008-19778058 | HMEC | breast: | n/a |
29 | chr10:19705290-19705340 | Jurkat | blood: | n/a |
30 | chr10:19705290-19705340 | H1-hESC | embryonic stem cell: | embryo |
31 | chr10:19540759-19540809 | GM06990 | blood: | n/a |
32 | chr10:19705290-19705340 | K562 | blood: | n/a |
33 | chr10:19408880-19408930 | Caco-2 | colon: | n/a |
34 | chr10:19705290-19705340 | AG04450 | lung: | fetal |
35 | chr10:19540759-19540809 | NHBE | bronchial: | n/a |
36 | chr10:19408880-19408930 | HCPEpiC | choroid plexus: | n/a |
37 | chr10:19778008-19778058 | HCPEpiC | choroid plexus: | n/a |
38 | chr10:19540759-19540809 | A549 | lung: | n/a |
39 | chr10:19705290-19705340 | HCT-116 | colon: | n/a |
40 | chr10:19540759-19540809 | NB4 | blood: | n/a |
41 | chr10:19778008-19778058 | ProgFib | skin: | n/a |
42 | chr10:19778008-19778058 | SKMC | muscle: | n/a |
43 | chr10:19778008-19778058 | BE2_C | brain: | n/a |
44 | chr10:19778008-19778058 | HIPEpiC | eye: | n/a |
45 | chr10:19540759-19540809 | BJ | skin: | n/a |
46 | chr10:19408880-19408930 | MCF-7 | breast: | n/a |
47 | chr10:19705290-19705340 | SK-N-MC | brain: | n/a |
48 | chr10:19540759-19540809 | GM12892 | blood: | n/a |
49 | chr10:19778008-19778058 | NB4 | blood: | n/a |
50 | chr10:19540759-19540809 | PANC-1 | pancreas: | n/a |
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:19534164..19535892-chr10:19543312..19545061,2 | MCF-7 | breast: | |
2 | chr10:19598040..19600371-chr10:19601058..19603498,2 | MCF-7 | breast: | |
3 | chr10:19813535..19816224-chr10:19819107..19822084,2 | MCF-7 | breast: | |
4 | chr10:19497233..19499735-chr10:19518305..19520335,2 | MCF-7 | breast: | |
5 | chr10:19544299..19547180-chr10:19549327..19551757,2 | MCF-7 | breast: | |
6 | chr10:19644040..19646101-chr10:19646355..19648931,2 | MCF-7 | breast: | |
7 | chr10:19419930..19422122-chr10:19424808..19427231,2 | K562 | blood: | |
8 | chr10:19702800..19704977-chr10:19710060..19711569,2 | MCF-7 | breast: | |
9 | chr10:19806044..19808111-chr10:19811941..19813567,2 | K562 | blood: | |
10 | chr10:19814024..19815559-chr10:19817040..19818969,2 | K562 | blood: | |
11 | chr10:19496117..19498249-chr10:19507924..19510695,2 | MCF-7 | breast: | |
12 | chr10:19578194..19580695-chr10:19582089..19585004,2 | K562 | blood: | |
13 | chr10:19547526..19550166-chr10:19551019..19552884,2 | MCF-7 | breast: | |
14 | chr10:19701583..19703629-chr10:19722720..19725656,2 | MCF-7 | breast: | |
15 | chr10:19702800..19704977-chr10:19710060..19711569,2 | MCF-7 | breast: | |
16 | chr10:19781369..19782958-chr10:19786296..19789278,2 | MCF-7 | breast: | |
17 | chr10:18978169..18978867-chr10:19699824..19700403,3 | MCF-7 | breast: | |
18 | chr10:19502635..19505234-chr10:19507325..19509106,2 | MCF-7 | breast: | |
19 | chr10:19547526..19550166-chr10:19551019..19552884,2 | MCF-7 | breast: | |
20 | chr10:19551633..19554617-chr10:19556322..19558693,2 | K562 | blood: | |
21 | chr10:19534164..19535892-chr10:19543312..19545061,2 | MCF-7 | breast: | |
22 | chr10:19610336..19613284-chr14:35868183..35870740,2 | MCF-7 | breast: | |
23 | chr10:19497233..19499735-chr10:19518305..19520335,2 | MCF-7 | breast: | |
24 | chr10:19458075..19458575-chr18:36304626..36305400,2 | MCF-7 | breast: | |
25 | chr10:19644040..19646101-chr10:19646355..19648931,2 | MCF-7 | breast: | |
26 | chr10:19785625..19787709-chr10:19788365..19791040,2 | MCF-7 | breast: | |
27 | chr10:19590664..19593584-chr10:19602792..19604860,2 | K562 | blood: | |
28 | chr10:19544299..19547180-chr10:19549327..19551757,2 | MCF-7 | breast: | |
29 | chr10:19424011..19426061-chr10:19435541..19437655,2 | K562 | blood: | |
30 | chr10:19701583..19703629-chr10:19722720..19725656,2 | MCF-7 | breast: | |
31 | chr10:19784572..19786146-chr10:19787649..19789922,2 | MCF-7 | breast: | |
32 | chr10:19510172..19510750-chr10:19521065..19522003,2 | MCF-7 | breast: | |
33 | chr10:19424011..19426061-chr10:19435541..19437655,2 | K562 | blood: | |
34 | chr10:19724105..19725802-chr10:19728835..19730495,2 | K562 | blood: | |
35 | chr10:19813535..19816224-chr10:19819107..19822084,2 | MCF-7 | breast: | |
36 | chr10:19769588..19771872-chr10:19775105..19777621,2 | K562 | blood: | |
37 | chr10:19784572..19786146-chr10:19787649..19789922,2 | MCF-7 | breast: | |
38 | chr10:19709784..19712687-chr10:19713625..19715285,2 | K562 | blood: | |
39 | chr10:19082548..19083519-chr10:19457655..19458211,2 | MCF-7 | breast: | |
40 | chr10:19551633..19554617-chr10:19556322..19558693,2 | K562 | blood: | |
41 | chr10:19724105..19725802-chr10:19728835..19730495,2 | K562 | blood: | |
42 | chr10:19502635..19505234-chr10:19507325..19509106,2 | MCF-7 | breast: | |
43 | chr10:19466484..19467327-chr10:19521039..19521911,3 | MCF-7 | breast: | |
44 | chr10:19776078..19778713-chr10:19790449..19792992,2 | K562 | blood: | |
45 | chr10:19466484..19467332-chr10:19521028..19521911,4 | MCF-7 | breast: | |
46 | chr10:19781369..19782958-chr10:19786296..19789278,2 | MCF-7 | breast: | |
47 | chr10:19466484..19467327-chr10:19521039..19521911,3 | MCF-7 | breast: | |
48 | chr10:19590664..19593584-chr10:19602792..19604860,2 | K562 | blood: | |
49 | chr10:19496117..19498249-chr10:19507924..19510695,2 | MCF-7 | breast: | |
50 | chr10:19709784..19712687-chr10:19713625..19715285,2 | K562 | blood: |
(count:4 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-NSUN6-7 | chr10:19780001-19780228 | NONHSAT011662 |
2 | lnc-PLXDC2-6 | chr10:19778030-19778329 | NONHSAT011661 |
3 | lnc-NSUN6-6 | chr10:19579152-19579395 | XLOC_008744 |
4 | lnc-NSUN6-6 | chr10:19580351-19580409 | XLOC_008744 |
No data |
No data |
Variant related genes | Relation type |
---|---|
MALRD1 | TF binding region |
ENSG00000236960 | TF binding region |
HMGN1P20 | TF binding region |
ENSG00000227734 | TF binding region |
MALRD1 | CpG island |
ENSG00000236960 | CpG island |
HMGN1P20 | CpG island |
ENSG00000227734 | CpG island |
ENSG00000239539 | chromatin interactions |
ENSG00000204740 | chromatin interactions |
ENSG00000120594 | chromatin interactions |
ENSG00000227734 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs4607971 | chr10:19407891-19407892 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
2 | rs147147589 | chr10:19407931-19407932 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs370841784 | chr10:19407952-19407953 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs192240989 | chr10:19407964-19407965 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs551679480 | chr10:19407998-19407999 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs569879645 | chr10:19408001-19408002 | Enhancers Active TSS ZNF genes & repeats Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs140399953 | chr10:19408007-19408008 | Enhancers Active TSS ZNF genes & repeats Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs554994470 | chr10:19408024-19408025 | Enhancers Active TSS ZNF genes & repeats Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs567295079 | chr10:19408035-19408036 | Enhancers Active TSS ZNF genes & repeats Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs142135750 | chr10:19408036-19408037 | Enhancers Active TSS ZNF genes & repeats Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs151183069 | chr10:19408144-19408145 | Enhancers Active TSS ZNF genes & repeats Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs577848943 | chr10:19408195-19408196 | Enhancers Active TSS ZNF genes & repeats Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs185880462 | chr10:19408207-19408208 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs189433031 | chr10:19408213-19408214 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs139158646 | chr10:19408221-19408222 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs542847407 | chr10:19408263-19408264 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs181800094 | chr10:19408274-19408275 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs149948315 | chr10:19408307-19408308 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs541392819 | chr10:19408323-19408324 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs184546592 | chr10:19408342-19408343 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs188958610 | chr10:19408347-19408348 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs115986351 | chr10:19408349-19408350 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs530550550 | chr10:19408407-19408408 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs12098292 | chr10:19408442-19408443 | Enhancers Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
25 | rs181446304 | chr10:19408450-19408451 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs113458407 | chr10:19408475-19408476 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs564209520 | chr10:19408503-19408504 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs186282537 | chr10:19408552-19408553 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs12098481 | chr10:19408582-19408583 | Enhancers Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
30 | rs538648939 | chr10:19408608-19408609 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
31 | rs191132969 | chr10:19408615-19408616 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
32 | rs35033822 | chr10:19408635-19408636 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
33 | rs575659097 | chr10:19408638-19408639 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
34 | rs180837745 | chr10:19408641-19408642 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
35 | rs186417628 | chr10:19408650-19408651 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
36 | rs12098459 | chr10:19408659-19408660 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
37 | rs565979548 | chr10:19408664-19408665 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
38 | rs559806850 | chr10:19408665-19408666 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
39 | rs141140679 | chr10:19408678-19408679 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
40 | rs35794168 | chr10:19408680-19408681 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
41 | rs144981735 | chr10:19408714-19408715 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | Overlapped CNVs | n/a |
42 | rs34172508 | chr10:19408765-19408766 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
43 | rs569691560 | chr10:19408802-19408803 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs113050522 | chr10:19408809-19408810 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs549535831 | chr10:19408833-19408834 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs561298280 | chr10:19408847-19408848 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs528703440 | chr10:19408880-19408881 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs11008535 | chr10:19408913-19408914 | Enhancers Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
49 | rs190916883 | chr10:19408929-19408930 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs538635070 | chr10:19408932-19408933 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Medulloblastoma | 16783165 | CNVD |
Breast cancer | 17133270 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Breast cancer | 17603634 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Pancreatic endocrine tumor | 17639061 | CNVD |
Gastric cancer | 17908304 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Melanoma | 18172304 | CNVD |
Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
Lung cancer | 18438408 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Oral cancer | 21386901 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Breast cancer | 21858162 | CNVD |
Acute lymphoblastic leukemia | 20724749 | CNVD |
Autism | 22495311 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Intracranial aneurysm | 16715129 | CNVD |
Cutaneous T-cell lymphoma | 21881587 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Multiple myeloma | 16616336 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Esophageal cancer | 21851588 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Epilepsy | 22083797 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Breast cancer | 21364760 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Breast cancer | 22522925 | CNVD |
Cancer | 20164919 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Acute lymphoblastic leukemia | 18458336 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:19404000-19412800 | Weak transcription | Duodenum Mucosa | Duodenum |
2 | chr10:19404400-19411200 | Weak transcription | Fetal Intestine Small | intestine |
3 | chr10:19404800-19410400 | Weak transcription | Fetal Intestine Large | intestine |
4 | chr10:19407000-19408200 | ZNF genes & repeats | iPS-20b Cell Line | embryonic stem cell |
5 | chr10:19407200-19409000 | Enhancers | H1 Cell Line | embryonic stem cell |
6 | chr10:19407400-19409000 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
7 | chr10:19407400-19409400 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
8 | chr10:19407600-19409000 | Enhancers | HUES64 Cell Line | embryonic stem cell |
9 | chr10:19407800-19408000 | Flanking Active TSS | HUES48 Cell Line | embryonic stem cell |
10 | chr10:19407800-19408000 | Flanking Active TSS | HUES6 Cell Line | embryonic stem cell |
11 | chr10:19407800-19409000 | Enhancers | ES-WA7 Cell Line | embryonic stem cell |
12 | chr10:19407800-19409000 | Enhancers | H9 Cell Line | embryonic stem cell |
13 | chr10:19408000-19408200 | Active TSS | HUES48 Cell Line | embryonic stem cell |
14 | chr10:19408000-19408200 | ZNF genes & repeats | HUES6 Cell Line | embryonic stem cell |
15 | chr10:19408000-19408400 | Enhancers | Cortex derived primary cultured neurospheres | brain |
16 | chr10:19408000-19408600 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
17 | chr10:19408200-19408600 | Enhancers | HUES48 Cell Line | embryonic stem cell |
18 | chr10:19408200-19409200 | Enhancers | HUES6 Cell Line | embryonic stem cell |
19 | chr10:19408200-19409200 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
20 | chr10:19408600-19408800 | Flanking Active TSS | HUES48 Cell Line | embryonic stem cell |
21 | chr10:19408600-19409000 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
22 | chr10:19408600-19409200 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
23 | chr10:19408800-19409200 | Enhancers | HUES48 Cell Line | embryonic stem cell |
24 | chr10:19409000-19409400 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
25 | chr10:19409200-19410400 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
26 | chr10:19410400-19413600 | Strong transcription | Fetal Intestine Large | intestine |
27 | chr10:19410800-19411000 | Enhancers | H9 Cell Line | embryonic stem cell |
28 | chr10:19410800-19411000 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
29 | chr10:19411200-19413600 | Strong transcription | Fetal Intestine Small | intestine |
30 | chr10:19412800-19413400 | Strong transcription | Duodenum Mucosa | Duodenum |
31 | chr10:19413400-19415800 | Weak transcription | Duodenum Mucosa | Duodenum |
32 | chr10:19413600-19417200 | Weak transcription | Fetal Intestine Large | intestine |
33 | chr10:19413600-19424000 | Weak transcription | Fetal Intestine Small | intestine |
34 | chr10:19414800-19434800 | Weak transcription | Small Intestine | intestine |
35 | chr10:19415800-19419400 | Strong transcription | Duodenum Mucosa | Duodenum |
36 | chr10:19417200-19419400 | Strong transcription | Fetal Intestine Large | intestine |
37 | chr10:19419400-19422800 | Weak transcription | Duodenum Mucosa | Duodenum |
38 | chr10:19419400-19425600 | Weak transcription | Fetal Intestine Large | intestine |
39 | chr10:19422600-19423200 | Enhancers | HUES48 Cell Line | embryonic stem cell |
40 | chr10:19422600-19423400 | Enhancers | HUES64 Cell Line | embryonic stem cell |
41 | chr10:19422800-19423600 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
42 | chr10:19422800-19423600 | Strong transcription | Duodenum Mucosa | Duodenum |
43 | chr10:19423000-19423200 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
44 | chr10:19423200-19423600 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
45 | chr10:19423600-19425600 | Weak transcription | Duodenum Mucosa | Duodenum |
46 | chr10:19424000-19424600 | Strong transcription | Fetal Intestine Small | intestine |
47 | chr10:19424600-19425000 | Weak transcription | Fetal Intestine Small | intestine |
48 | chr10:19425000-19426600 | Strong transcription | Fetal Intestine Small | intestine |
49 | chr10:19425600-19426200 | Strong transcription | Duodenum Mucosa | Duodenum |
50 | chr10:19425600-19430400 | Strong transcription | Fetal Intestine Large | intestine |