Variant report
Variant | esv2750886 |
---|---|
Chromosome Location | chr10:19432774-19832094 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1311)
- CpG islands (count:183)
- Chromatin interactive region (count:58)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr10:19674771-19675173 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr10:19603428-19603923 | HepG2 | liver: | n/a | n/a |
3 | ATF1 | chr10:19798150-19798313 | K562 | blood: | n/a | n/a |
4 | ATF1 | chr10:19792017-19792188 | K562 | blood: | n/a | n/a |
5 | BACH1 | chr10:19590996-19591316 | H1-hESC | embryonic stem cell: | n/a | n/a |
6 | BACH1 | chr10:19591069-19591317 | K562 | blood: | n/a | n/a |
7 | BACH1 | chr10:19457572-19457738 | H1-hESC | embryonic stem cell: | n/a | n/a |
8 | BACH1 | chr10:19777970-19778068 | H1-hESC | embryonic stem cell: | n/a | n/a |
9 | BACH1 | chr10:19523717-19523813 | H1-hESC | embryonic stem cell: | n/a | n/a |
10 | BATF | chr10:19807634-19807887 | GM12878 | blood: | n/a | chr10:19807691-19807699 |
11 | BCL11A | chr10:19807647-19807851 | GM12878 | blood: | n/a | n/a |
12 | BHLHE40 | chr10:19436379-19436415 | GM12878 | blood: | n/a | n/a |
13 | BHLHE40 | chr10:19458718-19458920 | HepG2 | liver: | n/a | n/a |
14 | BRCA1 | chr10:19676411-19676542 | Hela-S3 | cervix: | n/a | n/a |
15 | CCNT2 | chr10:19695758-19696077 | K562 | blood: | n/a | n/a |
16 | CEBPB | chr10:19721069-19721224 | H1-hESC | embryonic stem cell: | n/a | n/a |
17 | CEBPB | chr10:19737802-19737993 | HepG2 | liver: | n/a | chr10:19737941-19737954 chr10:19737943-19737952 chr10:19737943-19737954 |
18 | CEBPB | chr10:19703706-19703978 | IMR90 | lung: | n/a | chr10:19703745-19703758 chr10:19703799-19703810 chr10:19703801-19703810 chr10:19703800-19703811 chr10:19703747-19703758 chr10:19703747-19703758 |
19 | CEBPB | chr10:19710725-19711045 | IMR90 | lung: | n/a | chr10:19710892-19710903 |
20 | CEBPB | chr10:19798092-19798286 | A549 | lung: | n/a | chr10:19798130-19798141 |
21 | CEBPB | chr10:19617597-19617861 | H1-hESC | embryonic stem cell: | n/a | chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 |
22 | CEBPB | chr10:19617015-19617159 | IMR90 | lung: | n/a | chr10:19617045-19617054 chr10:19617043-19617054 |
23 | CEBPB | chr10:19621246-19621602 | K562 | blood: | n/a | chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428 |
24 | CEBPB | chr10:19825265-19825594 | A549 | lung: | n/a | n/a |
25 | CEBPB | chr10:19781986-19782089 | K562 | blood: | n/a | n/a |
26 | CEBPB | chr10:19621255-19621616 | A549 | lung: | n/a | chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428 |
27 | CEBPB | chr10:19589005-19589242 | IMR90 | lung: | n/a | n/a |
28 | CEBPB | chr10:19721715-19722074 | HepG2 | liver: | n/a | chr10:19721890-19721907 chr10:19721888-19721905 |
29 | CEBPB | chr10:19621307-19621498 | HepG2 | liver: | n/a | chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428 |
30 | CEBPB | chr10:19825290-19825489 | H1-hESC | embryonic stem cell: | n/a | n/a |
31 | CEBPB | chr10:19721050-19721310 | IMR90 | lung: | n/a | chr10:19721276-19721289 chr10:19721289-19721302 chr10:19721289-19721300 chr10:19721254-19721267 chr10:19721289-19721302 |
32 | CEBPB | chr10:19625503-19625733 | HepG2 | liver: | n/a | chr10:19625623-19625634 |
33 | CEBPB | chr10:19710815-19710994 | K562 | blood: | n/a | chr10:19710892-19710903 |
34 | CEBPB | chr10:19781492-19782070 | IMR90 | lung: | n/a | chr10:19781628-19781639 |
35 | CEBPB | chr10:19825248-19825603 | HepG2 | liver: | n/a | n/a |
36 | CEBPB | chr10:19685091-19685283 | HepG2 | liver: | n/a | chr10:19685122-19685133 |
37 | CEBPB | chr10:19710723-19711033 | HepG2 | liver: | n/a | chr10:19710892-19710903 |
38 | CEBPB | chr10:19481040-19481301 | IMR90 | lung: | n/a | chr10:19481196-19481207 |
39 | CEBPB | chr10:19621201-19621687 | A549 | lung: | n/a | chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428 |
40 | CEBPB | chr10:19737930-19737982 | K562 | blood: | n/a | chr10:19737941-19737954 chr10:19737943-19737952 chr10:19737943-19737954 |
41 | CEBPB | chr10:19825267-19825560 | IMR90 | lung: | n/a | n/a |
42 | CEBPB | chr10:19589028-19589280 | HepG2 | liver: | n/a | n/a |
43 | CEBPB | chr10:19621245-19621611 | IMR90 | lung: | n/a | chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428 |
44 | CEBPB | chr10:19616929-19617199 | HepG2 | liver: | n/a | chr10:19617045-19617054 chr10:19617043-19617054 |
45 | CEBPB | chr10:19781460-19782153 | HepG2 | liver: | n/a | chr10:19781628-19781639 |
46 | CEBPB | chr10:19703654-19703971 | HepG2 | liver: | n/a | chr10:19703745-19703758 chr10:19703799-19703810 chr10:19703801-19703810 chr10:19703800-19703811 chr10:19703747-19703758 chr10:19703747-19703758 |
47 | CEBPB | chr10:19617025-19617162 | A549 | lung: | n/a | chr10:19617045-19617054 chr10:19617043-19617054 |
48 | CEBPB | chr10:19787873-19788271 | MCF-7 | breast: | n/a | chr10:19788093-19788106 chr10:19788094-19788105 chr10:19788093-19788106 chr10:19788093-19788104 chr10:19788093-19788106 |
49 | CEBPB | chr10:19621212-19621668 | MCF-7 | breast: | n/a | chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428 |
50 | CEBPB | chr10:19674771-19675146 | HepG2 | liver: | n/a | chr10:19674953-19674964 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:19778008-19778058 | BJ | skin: | n/a |
2 | chr10:19778008-19778058 | IMR90 | lung: | fetal |
3 | chr10:19778008-19778058 | HNPCEpiC | eye: | n/a |
4 | chr10:19778008-19778058 | HCF | heart: | n/a |
5 | chr10:19540759-19540809 | NB4 | blood: | n/a |
6 | chr10:19705290-19705340 | GM12892 | blood: | n/a |
7 | chr10:19705290-19705340 | CMK | blood: | n/a |
8 | chr10:19540759-19540809 | BE2_C | brain: | n/a |
9 | chr10:19540759-19540809 | HRPEpiC | eye: | n/a |
10 | chr10:19705290-19705340 | PrEC | prostate: | n/a |
11 | chr10:19778008-19778058 | NH-A | brain: | n/a |
12 | chr10:19705290-19705340 | BJ | skin: | n/a |
13 | chr10:19705290-19705340 | GM19239 | blood: | n/a |
14 | chr10:19540759-19540809 | SK-N-MC | brain: | n/a |
15 | chr10:19778008-19778058 | T-47D | breast: | n/a |
16 | chr10:19778008-19778058 | HMEC | breast: | n/a |
17 | chr10:19778008-19778058 | GM12891 | blood: | n/a |
18 | chr10:19778008-19778058 | NHDF-neo | bronchial: | n/a |
19 | chr10:19705290-19705340 | SKMC | muscle: | n/a |
20 | chr10:19778008-19778058 | AG09319 | gingival: | n/a |
21 | chr10:19778008-19778058 | NB4 | blood: | n/a |
22 | chr10:19705290-19705340 | IMR90 | lung: | fetal |
23 | chr10:19778008-19778058 | HPAEpiC | pulmonary alveolar: | n/a |
24 | chr10:19705290-19705340 | HUVEC | blood vessel: | n/a |
25 | chr10:19705290-19705340 | SK-N-SH_RA | brain: | n/a |
26 | chr10:19705290-19705340 | RPTEC | kidney: | n/a |
27 | chr10:19540759-19540809 | MCF10A-Er-Src | breast: | n/a |
28 | chr10:19778008-19778058 | GM06990 | blood: | n/a |
29 | chr10:19778008-19778058 | AG04449 | skin: | fetal |
30 | chr10:19705290-19705340 | Jurkat | blood: | n/a |
31 | chr10:19705290-19705340 | BE2_C | brain: | n/a |
32 | chr10:19778008-19778058 | MCF10A-Er-Src | breast: | n/a |
33 | chr10:19705290-19705340 | HRCEpiC | kidney: | n/a |
34 | chr10:19540759-19540809 | CMK | blood: | n/a |
35 | chr10:19540759-19540809 | AG09319 | gingival: | n/a |
36 | chr10:19540759-19540809 | HAEpiC | amniotic membrane: | n/a |
37 | chr10:19540759-19540809 | SK-N-SH_RA | brain: | n/a |
38 | chr10:19778008-19778058 | GM12892 | blood: | n/a |
39 | chr10:19778008-19778058 | HEEpiC | esophagus: | n/a |
40 | chr10:19778008-19778058 | MCF-7 | breast: | n/a |
41 | chr10:19778008-19778058 | HRCEpiC | kidney: | n/a |
42 | chr10:19778008-19778058 | ovcar-3 | ovarian: | n/a |
43 | chr10:19778008-19778058 | HL-60 | blood: | n/a |
44 | chr10:19778008-19778058 | GM12878 | blood: | n/a |
45 | chr10:19705290-19705340 | AoSMC | blood vessel: | n/a |
46 | chr10:19778008-19778058 | HCT-116 | colon: | n/a |
47 | chr10:19778008-19778058 | HRPEpiC | eye: | n/a |
48 | chr10:19540759-19540809 | NH-A | brain: | n/a |
49 | chr10:19705290-19705340 | PFSK-1 | brain: | n/a |
50 | chr10:19778008-19778058 | Hepatocyte | liver: | n/a |
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:19466484..19467327-chr10:19521039..19521911,3 | MCF-7 | breast: | |
2 | chr10:19813535..19816224-chr10:19819107..19822084,2 | MCF-7 | breast: | |
3 | chr10:19814024..19815559-chr10:19817040..19818969,2 | K562 | blood: | |
4 | chr10:19701583..19703629-chr10:19722720..19725656,2 | MCF-7 | breast: | |
5 | chr10:19466484..19467332-chr10:19521028..19521911,4 | MCF-7 | breast: | |
6 | chr10:19813535..19816224-chr10:19819107..19822084,2 | MCF-7 | breast: | |
7 | chr10:19814024..19815559-chr10:19817040..19818969,2 | K562 | blood: | |
8 | chr10:19702800..19704977-chr10:19710060..19711569,2 | MCF-7 | breast: | |
9 | chr10:19544299..19547180-chr10:19549327..19551757,2 | MCF-7 | breast: | |
10 | chr10:19578194..19580695-chr10:19582089..19585004,2 | K562 | blood: | |
11 | chr10:19497233..19499735-chr10:19518305..19520335,2 | MCF-7 | breast: | |
12 | chr10:19769588..19771872-chr10:19775105..19777621,2 | K562 | blood: | |
13 | chr10:19497233..19499735-chr10:19518305..19520335,2 | MCF-7 | breast: | |
14 | chr10:19781369..19782958-chr10:19786296..19789278,2 | MCF-7 | breast: | |
15 | chr10:19724105..19725802-chr10:19728835..19730495,2 | K562 | blood: | |
16 | chr10:19510172..19510750-chr10:19521065..19522003,2 | MCF-7 | breast: | |
17 | chr10:19534164..19535892-chr10:19543312..19545061,2 | MCF-7 | breast: | |
18 | chr10:19623502..19625941-chr10:19631040..19633191,2 | K562 | blood: | |
19 | chr10:19702800..19704977-chr10:19710060..19711569,2 | MCF-7 | breast: | |
20 | chr10:19785625..19787709-chr10:19788365..19791040,2 | MCF-7 | breast: | |
21 | chr10:19496117..19498249-chr10:19507924..19510695,2 | MCF-7 | breast: | |
22 | chr10:19701065..19702056-chr10:20076746..20077511,2 | MCF-7 | breast: | |
23 | chr10:19496117..19498249-chr10:19507924..19510695,2 | MCF-7 | breast: | |
24 | chr10:19598040..19600371-chr10:19601058..19603498,2 | MCF-7 | breast: | |
25 | chr10:19590664..19593584-chr10:19602792..19604860,2 | K562 | blood: | |
26 | chr10:19547526..19550166-chr10:19551019..19552884,2 | MCF-7 | breast: | |
27 | chr10:19784572..19786146-chr10:19787649..19789922,2 | MCF-7 | breast: | |
28 | chr10:19082548..19083519-chr10:19457655..19458211,2 | MCF-7 | breast: | |
29 | chr10:19623502..19625941-chr10:19631040..19633191,2 | K562 | blood: | |
30 | chr10:19458075..19458575-chr18:36304626..36305400,2 | MCF-7 | breast: | |
31 | chr10:19701583..19703629-chr10:19722720..19725656,2 | MCF-7 | breast: | |
32 | chr10:18978169..18978867-chr10:19699824..19700403,3 | MCF-7 | breast: | |
33 | chr10:19724105..19725802-chr10:19728835..19730495,2 | K562 | blood: | |
34 | chr10:19466484..19467327-chr10:19521039..19521911,3 | MCF-7 | breast: | |
35 | chr10:19502635..19505234-chr10:19507325..19509106,2 | MCF-7 | breast: | |
36 | chr10:19551633..19554617-chr10:19556322..19558693,2 | K562 | blood: | |
37 | chr10:19644040..19646101-chr10:19646355..19648931,2 | MCF-7 | breast: | |
38 | chr10:19551633..19554617-chr10:19556322..19558693,2 | K562 | blood: | |
39 | chr10:19704403..19706854-chr10:20104452..20106050,2 | MCF-7 | breast: | |
40 | chr10:19502635..19505234-chr10:19507325..19509106,2 | MCF-7 | breast: | |
41 | chr10:19806044..19808111-chr10:19811941..19813567,2 | K562 | blood: | |
42 | chr10:19781369..19782958-chr10:19786296..19789278,2 | MCF-7 | breast: | |
43 | chr10:19776078..19778713-chr10:19790449..19792992,2 | K562 | blood: | |
44 | chr10:19709784..19712687-chr10:19713625..19715285,2 | K562 | blood: | |
45 | chr10:19784572..19786146-chr10:19787649..19789922,2 | MCF-7 | breast: | |
46 | chr10:19544299..19547180-chr10:19549327..19551757,2 | MCF-7 | breast: | |
47 | chr10:19644040..19646101-chr10:19646355..19648931,2 | MCF-7 | breast: | |
48 | chr10:19424011..19426061-chr10:19435541..19437655,2 | K562 | blood: | |
49 | chr10:19785625..19787709-chr10:19788365..19791040,2 | MCF-7 | breast: | |
50 | chr10:19806044..19808111-chr10:19811941..19813567,2 | K562 | blood: |
(count:4 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-PLXDC2-6 | chr10:19778030-19778329 | NONHSAT011661 |
2 | lnc-NSUN6-6 | chr10:19580351-19580409 | XLOC_008744 |
3 | lnc-NSUN6-6 | chr10:19579152-19579395 | XLOC_008744 |
4 | lnc-NSUN6-7 | chr10:19780001-19780228 | NONHSAT011662 |
No data |
No data |
Variant related genes | Relation type |
---|---|
HMGN1P20 | TF binding region |
MALRD1 | TF binding region |
ENSG00000236960 | TF binding region |
ENSG00000227734 | TF binding region |
HMGN1P20 | CpG island |
MALRD1 | CpG island |
ENSG00000236960 | CpG island |
ENSG00000227734 | CpG island |
ENSG00000204740 | chromatin interactions |
ENSG00000120594 | chromatin interactions |
ENSG00000239539 | chromatin interactions |
ENSG00000227734 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs7081937 | chr10:19432774-19432775 | Strong transcription Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
2 | rs181171165 | chr10:19432776-19432777 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs186149712 | chr10:19432777-19432778 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs563222398 | chr10:19432783-19432784 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs140908907 | chr10:19432794-19432795 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs150191437 | chr10:19432870-19432871 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs532892406 | chr10:19432889-19432890 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs190720539 | chr10:19432896-19432897 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs527347393 | chr10:19432939-19432940 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs551896315 | chr10:19432951-19432952 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs570113354 | chr10:19432953-19432954 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs77019244 | chr10:19432979-19432980 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs7098738 | chr10:19432998-19432999 | Strong transcription Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
14 | rs568311310 | chr10:19433004-19433005 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs535408263 | chr10:19433012-19433013 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs553884544 | chr10:19433033-19433034 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs572278515 | chr10:19433075-19433076 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs184167647 | chr10:19433104-19433105 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs528583827 | chr10:19433128-19433129 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs188766392 | chr10:19433144-19433145 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs72790769 | chr10:19433150-19433151 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs7097878 | chr10:19433158-19433159 | Strong transcription Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
23 | rs562753642 | chr10:19433160-19433161 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs530390114 | chr10:19433162-19433163 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs79114425 | chr10:19433233-19433234 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs74983719 | chr10:19433237-19433238 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs75436982 | chr10:19433239-19433240 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs77920505 | chr10:19433240-19433241 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs542169952 | chr10:19433317-19433318 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs73591929 | chr10:19433319-19433320 | Strong transcription Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
31 | rs527929555 | chr10:19433328-19433329 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs551837433 | chr10:19433335-19433336 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs74506493 | chr10:19433385-19433386 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs535261667 | chr10:19433387-19433388 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs531322289 | chr10:19433446-19433447 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs370683390 | chr10:19433473-19433474 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs190655318 | chr10:19433511-19433512 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs182911228 | chr10:19433523-19433524 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs371281809 | chr10:19433553-19433554 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs61851291 | chr10:19433618-19433619 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs535699166 | chr10:19433624-19433625 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs187214015 | chr10:19433668-19433669 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs569011674 | chr10:19433683-19433684 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs191761183 | chr10:19433694-19433695 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs183847648 | chr10:19433741-19433742 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs61851292 | chr10:19433757-19433758 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
47 | rs58721566 | chr10:19433759-19433760 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs398045882 | chr10:19433760-19433761 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs74865698 | chr10:19433780-19433781 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs192227390 | chr10:19433795-19433796 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Medulloblastoma | 16783165 | CNVD |
Breast cancer | 17133270 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Breast cancer | 17603634 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Pancreatic endocrine tumor | 17639061 | CNVD |
Gastric cancer | 17908304 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Melanoma | 18172304 | CNVD |
Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
Lung cancer | 18438408 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Oral cancer | 21386901 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Breast cancer | 21858162 | CNVD |
Acute lymphoblastic leukemia | 20724749 | CNVD |
Autism | 22495311 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Intracranial aneurysm | 16715129 | CNVD |
Cutaneous T-cell lymphoma | 21881587 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Multiple myeloma | 16616336 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Esophageal cancer | 21851588 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Epilepsy | 22083797 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Breast cancer | 21364760 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Breast cancer | 22522925 | CNVD |
Cancer | 20164919 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Acute lymphoblastic leukemia | 18458336 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:19414800-19434800 | Weak transcription | Small Intestine | intestine |
2 | chr10:19426600-19436000 | Weak transcription | Fetal Intestine Small | intestine |
3 | chr10:19430400-19435000 | Weak transcription | Fetal Intestine Large | intestine |
4 | chr10:19432000-19433400 | Strong transcription | Duodenum Mucosa | Duodenum |
5 | chr10:19433400-19434800 | Weak transcription | Duodenum Mucosa | Duodenum |
6 | chr10:19434800-19435000 | Enhancers | Small Intestine | intestine |
7 | chr10:19434800-19437200 | Strong transcription | Duodenum Mucosa | Duodenum |
8 | chr10:19435000-19439600 | Strong transcription | Fetal Intestine Large | intestine |
9 | chr10:19435200-19435400 | Enhancers | Fetal Kidney | kidney |
10 | chr10:19436000-19438400 | Strong transcription | Fetal Intestine Small | intestine |
11 | chr10:19436400-19436800 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
12 | chr10:19437200-19438800 | Weak transcription | Duodenum Mucosa | Duodenum |
13 | chr10:19438400-19489000 | Weak transcription | Fetal Intestine Small | intestine |
14 | chr10:19438800-19439800 | Strong transcription | Duodenum Mucosa | Duodenum |
15 | chr10:19439600-19440800 | Weak transcription | Fetal Intestine Large | intestine |
16 | chr10:19439800-19443400 | Weak transcription | Duodenum Mucosa | Duodenum |
17 | chr10:19440800-19441200 | Strong transcription | Fetal Intestine Large | intestine |
18 | chr10:19441200-19442400 | Weak transcription | Fetal Intestine Large | intestine |
19 | chr10:19442400-19446200 | Strong transcription | Fetal Intestine Large | intestine |
20 | chr10:19443400-19446000 | Strong transcription | Duodenum Mucosa | Duodenum |
21 | chr10:19444000-19444800 | Enhancers | Fetal Lung | lung |
22 | chr10:19446000-19450600 | Weak transcription | Duodenum Mucosa | Duodenum |
23 | chr10:19446200-19446800 | Weak transcription | Fetal Intestine Large | intestine |
24 | chr10:19446800-19447000 | Strong transcription | Fetal Intestine Large | intestine |
25 | chr10:19447000-19447400 | Weak transcription | Fetal Intestine Large | intestine |
26 | chr10:19447400-19448800 | Strong transcription | Fetal Intestine Large | intestine |
27 | chr10:19448400-19448800 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
28 | chr10:19448800-19454600 | Weak transcription | Fetal Intestine Large | intestine |
29 | chr10:19450600-19451000 | Strong transcription | Duodenum Mucosa | Duodenum |
30 | chr10:19451000-19454600 | Weak transcription | Duodenum Mucosa | Duodenum |
31 | chr10:19453200-19453800 | Enhancers | NHEK | skin |
32 | chr10:19454600-19457600 | Strong transcription | Duodenum Mucosa | Duodenum |
33 | chr10:19454600-19457600 | Strong transcription | Fetal Intestine Large | intestine |
34 | chr10:19457600-19457800 | Genic enhancers | Fetal Intestine Large | intestine |
35 | chr10:19457600-19475800 | Weak transcription | Duodenum Mucosa | Duodenum |
36 | chr10:19457800-19458200 | Enhancers | Fetal Intestine Large | intestine |
37 | chr10:19458200-19465800 | Weak transcription | Fetal Intestine Large | intestine |
38 | chr10:19465600-19465800 | Enhancers | Pancreas | Pancrea |
39 | chr10:19465800-19468000 | Enhancers | Fetal Intestine Large | intestine |
40 | chr10:19467000-19467400 | Enhancers | Pancreatic Islets | Pancreatic Islet |
41 | chr10:19467400-19467600 | Flanking Active TSS | Pancreatic Islets | Pancreatic Islet |
42 | chr10:19467600-19467800 | Active TSS | Pancreatic Islets | Pancreatic Islet |
43 | chr10:19467600-19468000 | Active TSS | Foreskin Melanocyte Primary Cells skin03 | Skin |
44 | chr10:19467800-19468000 | Flanking Active TSS | Pancreatic Islets | Pancreatic Islet |
45 | chr10:19468000-19468400 | Active TSS | Pancreatic Islets | Pancreatic Islet |
46 | chr10:19468000-19475800 | Weak transcription | Fetal Intestine Large | intestine |
47 | chr10:19473000-19473200 | Enhancers | Fetal Lung | lung |
48 | chr10:19473800-19474600 | Active TSS | Fetal Lung | lung |
49 | chr10:19474600-19474800 | Enhancers | Fetal Lung | lung |
50 | chr10:19475800-19477600 | Strong transcription | Fetal Intestine Large | intestine |