Variant report
Variant | esv2751573 |
---|---|
Chromosome Location | chr16:34437589-34790371 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1482)
- CpG islands (count:3236)
- Chromatin interactive region (count:6)
- LncRNA region (count:71)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ATF1 | chr16:34643912-34644196 | K562 | blood: | n/a | n/a |
2 | ATF1 | chr16:34715569-34715609 | K562 | blood: | n/a | n/a |
3 | ATF1 | chr16:34573796-34574082 | K562 | blood: | n/a | n/a |
4 | ATF1 | chr16:34574452-34574460 | K562 | blood: | n/a | n/a |
5 | ATF1 | chr16:34486728-34487212 | K562 | blood: | n/a | n/a |
6 | ATF1 | chr16:34787094-34787358 | K562 | blood: | n/a | n/a |
7 | ATF1 | chr16:34625774-34626005 | K562 | blood: | n/a | n/a |
8 | ATF1 | chr16:34765990-34765998 | K562 | blood: | n/a | n/a |
9 | ATF1 | chr16:34589373-34589390 | K562 | blood: | n/a | n/a |
10 | ATF1 | chr16:34768061-34768441 | K562 | blood: | n/a | n/a |
11 | BATF | chr16:34539865-34540180 | GM12878 | blood: | n/a | chr16:34540044-34540055 |
12 | BATF | chr16:34536693-34536965 | GM12878 | blood: | n/a | chr16:34536834-34536845 |
13 | BATF | chr16:34731793-34732055 | GM12878 | blood: | n/a | chr16:34731883-34731894 chr16:34731915-34731926 |
14 | BATF | chr16:34731803-34731989 | GM12878 | blood: | n/a | chr16:34731883-34731894 chr16:34731915-34731926 |
15 | BATF | chr16:34539887-34540221 | GM12878 | blood: | n/a | chr16:34540044-34540055 |
16 | BHLHE40 | chr16:34732021-34732023 | GM12878 | blood: | n/a | n/a |
17 | BHLHE40 | chr16:34721874-34721912 | GM12878 | blood: | n/a | n/a |
18 | BHLHE40 | chr16:34647001-34647022 | GM12878 | blood: | n/a | n/a |
19 | BHLHE40 | chr16:34625401-34626021 | K562 | blood: | n/a | n/a |
20 | BHLHE40 | chr16:34745112-34745352 | K562 | blood: | n/a | chr16:34745242-34745251 |
21 | BHLHE40 | chr16:34745103-34745432 | GM12878 | blood: | n/a | chr16:34745242-34745251 |
22 | BHLHE40 | chr16:34741044-34741235 | K562 | blood: | n/a | n/a |
23 | BHLHE40 | chr16:34598011-34598017 | K562 | blood: | n/a | n/a |
24 | BHLHE40 | chr16:34740335-34740524 | K562 | blood: | n/a | n/a |
25 | BHLHE40 | chr16:34726730-34726951 | K562 | blood: | n/a | chr16:34726896-34726912 |
26 | BHLHE40 | chr16:34625806-34626006 | GM12878 | blood: | n/a | n/a |
27 | BRCA1 | chr16:34666402-34666616 | H1-hESC | embryonic stem cell: | n/a | n/a |
28 | BRCA1 | chr16:34666658-34666728 | GM12878 | blood: | n/a | n/a |
29 | CBX3 | chr16:34625799-34625988 | K562 | blood: | n/a | n/a |
30 | CEBPB | chr16:34597947-34598296 | A549 | lung: | n/a | n/a |
31 | CEBPB | chr16:34767984-34768445 | A549 | lung: | n/a | n/a |
32 | CEBPB | chr16:34514068-34514216 | HepG2 | liver: | n/a | n/a |
33 | CEBPB | chr16:34637648-34637812 | K562 | blood: | n/a | chr16:34637709-34637720 |
34 | CEBPB | chr16:34533242-34533527 | Hela-S3 | cervix: | n/a | chr16:34533406-34533417 |
35 | CEBPB | chr16:34530917-34531822 | A549 | lung: | n/a | n/a |
36 | CEBPB | chr16:34730735-34731108 | IMR90 | lung: | n/a | n/a |
37 | CEBPB | chr16:34532887-34533747 | HepG2 | liver: | n/a | chr16:34533406-34533417 |
38 | CEBPB | chr16:34685018-34685433 | A549 | lung: | n/a | n/a |
39 | CEBPB | chr16:34449647-34450070 | IMR90 | lung: | n/a | n/a |
40 | CEBPB | chr16:34768107-34768405 | K562 | blood: | n/a | n/a |
41 | CEBPB | chr16:34540547-34540747 | K562 | blood: | n/a | n/a |
42 | CEBPB | chr16:34637662-34637759 | A549 | lung: | n/a | chr16:34637709-34637720 |
43 | CEBPB | chr16:34683490-34683958 | HepG2 | liver: | n/a | chr16:34683618-34683629 |
44 | CEBPB | chr16:34603883-34604326 | HepG2 | liver: | n/a | n/a |
45 | CEBPB | chr16:34597883-34598280 | HepG2 | liver: | n/a | n/a |
46 | CEBPB | chr16:34598745-34598792 | K562 | blood: | n/a | n/a |
47 | CEBPB | chr16:34540533-34540804 | A549 | lung: | n/a | n/a |
48 | CEBPB | chr16:34598584-34598949 | HepG2 | liver: | n/a | n/a |
49 | CEBPB | chr16:34598601-34599065 | A549 | lung: | n/a | n/a |
50 | CEBPB | chr16:34532934-34533739 | IMR90 | lung: | n/a | chr16:34533406-34533417 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr16:34587120-34587170 | AG10803 | skin: | n/a |
2 | chr16:34712713-34712763 | HPAEpiC | pulmonary alveolar: | n/a |
3 | chr16:34760531-34760581 | BJ | skin: | n/a |
4 | chr16:34587120-34587170 | AG10803 | skin: | n/a |
5 | chr16:34712713-34712763 | HPAEpiC | pulmonary alveolar: | n/a |
6 | chr16:34760531-34760581 | BJ | skin: | n/a |
7 | chr16:34489904-34489954 | AG10803 | skin: | n/a |
8 | chr16:34777881-34777931 | SK-N-SH_RA | brain: | n/a |
9 | chr16:34578819-34578869 | NT2-D1 | testis: | n/a |
10 | chr16:34777881-34777931 | HepG2 | liver: | n/a |
11 | chr16:34740585-34740635 | A549 | lung: | n/a |
12 | chr16:34741966-34742016 | NH-A | brain: | n/a |
13 | chr16:34439811-34439861 | BE2_C | brain: | n/a |
14 | chr16:34787199-34787249 | GM12892 | blood: | n/a |
15 | chr16:34781451-34781501 | NHDF-neo | bronchial: | n/a |
16 | chr16:34781451-34781501 | SK-N-SH | brain: | n/a |
17 | chr16:34778087-34778137 | NH-A | brain: | n/a |
18 | chr16:34663929-34663979 | PrEC | prostate: | n/a |
19 | chr16:34781451-34781501 | HCM | heart: | n/a |
20 | chr16:34716002-34716052 | T-47D | breast: | n/a |
21 | chr16:34596941-34596991 | PrEC | prostate: | n/a |
22 | chr16:34777963-34778013 | AoSMC | blood vessel: | n/a |
23 | chr16:34456419-34456469 | HEEpiC | esophagus: | n/a |
24 | chr16:34741493-34741543 | U87 | brain: | n/a |
25 | chr16:34456419-34456469 | Jurkat | blood: | n/a |
26 | chr16:34439811-34439861 | GM12878 | blood: | n/a |
27 | chr16:34578819-34578869 | SAEC | small airway: | n/a |
28 | chr16:34625446-34625496 | Hepatocyte | liver: | n/a |
29 | chr16:34598029-34598079 | HNPCEpiC | eye: | n/a |
30 | chr16:34741966-34742016 | AG09319 | gingival: | n/a |
31 | chr16:34787392-34787442 | HPAEpiC | pulmonary alveolar: | n/a |
32 | chr16:34586837-34586887 | HPAEpiC | pulmonary alveolar: | n/a |
33 | chr16:34737523-34737573 | HCPEpiC | choroid plexus: | n/a |
34 | chr16:34741966-34742016 | H1-hESC | embryonic stem cell: | embryo |
35 | chr16:34726856-34726906 | NH-A | brain: | n/a |
36 | chr16:34787392-34787442 | MCF10A-Er-Src | breast: | n/a |
37 | chr16:34587120-34587170 | U87 | brain: | n/a |
38 | chr16:34741966-34742016 | Jurkat | blood: | n/a |
39 | chr16:34489904-34489954 | GM19239 | blood: | n/a |
40 | chr16:34442602-34442652 | HepG2 | liver: | n/a |
41 | chr16:34443612-34443662 | MCF10A-Er-Src | breast: | n/a |
42 | chr16:34596583-34596633 | GM12891 | blood: | n/a |
43 | chr16:34445785-34445835 | HAEpiC | amniotic membrane: | n/a |
44 | chr16:34442602-34442652 | HMEC | breast: | n/a |
45 | chr16:34741966-34742016 | PrEC | prostate: | n/a |
46 | chr16:34740934-34740984 | RPTEC | kidney: | n/a |
47 | chr16:34587307-34587357 | A549 | lung: | n/a |
48 | chr16:34586837-34586887 | MCF-7 | breast: | n/a |
49 | chr16:34741966-34742016 | HL-60 | blood: | n/a |
50 | chr16:34596941-34596991 | BE2_C | brain: | n/a |
(count:6 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr16:34726782..34727382-chr16:34760283..34761051,3 | MCF-7 | breast: | |
2 | chr16:34429328..34431681-chr16:34466203..34469132,2 | K562 | blood: | |
3 | chr15:57024256..57026523-chr16:34752267..34754460,2 | MCF-7 | breast: | |
4 | chr16:34422640..34423667-chr16:34625487..34626782,3 | MCF-7 | breast: | |
5 | chr15:56788863..56789371-chr16:34759996..34760825,2 | MCF-7 | breast: | |
6 | chr16:34726782..34727382-chr16:34760283..34761051,3 | MCF-7 | breast: |
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-CTD-2144E22.5.1-31 | chr16:34751386-34751515 | NONHSAT142207 |
2 | lnc-CTD-2144E22.5.1-6 | chr16:34610877-34611020 | ENSG00000259841.2 |
3 | lnc-CTD-2144E22.5.1-6 | chr16:34616795-34616969 | NONHSAT142183 |
4 | lnc-LINC00273-24 | chr16:34641562-34641720 | NONHSAT142186 |
5 | lnc-CTD-2144E22.5.1-5 | chr16:34483054-34483172 | ENSG00000260958.2 |
6 | lnc-LINC00273-28 | chr16:34740963-34741308 | NONHSAT142204 |
7 | lnc-CTD-2144E22.5.1-6 | chr16:34616795-34616837 | ENSG00000259841.2 |
8 | lnc-CTD-2144E22.5.1-5 | chr16:34487609-34488020 | ENSG00000260958.2 |
9 | lnc-LINC00273-24 | chr16:34640118-34640617 | NONHSAT142186 |
10 | lnc-LINC00273-25 | chr16:34714529-34714852 | NONHSAT142191 |
11 | lnc-LINC00273-25 | chr16:34712988-34713065 | NONHSAT142192 |
12 | lnc-CTD-2144E22.5.1-6 | chr16:34620250-34620420 | ENSG00000259841.2 |
13 | lnc-LINC00273-25 | chr16:34712350-34712699 | NONHSAT142191 |
14 | lnc-LINC00273-8 | chr16:34766012-34766124 | XLOC_011927 |
15 | lnc-LINC00273-7 | chr16:34730748-34730828 | ENSG00000261445.1 |
16 | lnc-LINC00273-18 | chr16:34455954-34456419 | NONHSAT142168 |
17 | lnc-LINC00273-22 | chr16:34570743-34570817 | NONHSAT142179 |
18 | lnc-CTD-2144E22.5.1-29 | chr16:34723608-34724583 | NONHSAT142194 |
19 | lnc-CTD-2144E22.5.1-31 | chr16:34743025-34743136 | NONHSAT142207 |
20 | lnc-CTD-2144E22.5.1-6 | chr16:34625678-34626084 | NONHSAT142183 |
21 | lnc-CTD-2144E22.5.1-5 | chr16:34487252-34487411 | NONHSAT142170 |
22 | lnc-LINC00273-22 | chr16:34570437-34570514 | NONHSAT142179 |
23 | lnc-CTD-2144E22.5.1-6 | chr16:34610877-34611020 | NONHSAT142183 |
24 | lnc-LINC00273-25 | chr16:34713636-34713735 | NONHSAT142191 |
25 | lnc-CTD-2144E22.5.1-6 | chr16:34616840-34616969 | ENSG00000259841.2 |
26 | lnc-LINC00273-7 | chr16:34729913-34729959 | ENSG00000261445.1 |
27 | lnc-CTD-2144E22.5.1-6 | chr16:34620250-34620420 | NONHSAT142183 |
28 | lnc-LINC00273-27 | chr16:34740133-34740549 | NONHSAT142200 |
29 | lnc-CTD-2144E22.5.1-31 | chr16:34758333-34758358 | NONHSAT142207 |
30 | lnc-CTD-2144E22.5.1-24 | chr16:34581756-34582668 | NONHSAT142180 |
31 | lnc-LINC00273-8 | chr16:34765218-34765705 | XLOC_011927 |
32 | lnc-LINC00273-27 | chr16:34739472-34739785 | NONHSAT142200 |
33 | lnc-CTD-2144E22.5.1-32 | chr16:34782288-34783200 | NONHSAT142214 |
34 | lnc-CTD-2144E22.5.1-6 | chr16:34597787-34597899 | NONHSAT142183 |
35 | lnc-LINC00273-25 | chr16:34712988-34713065 | NONHSAT142191 |
36 | lnc-LINC00273-22 | chr16:34569648-34570147 | NONHSAT142179 |
37 | lnc-LINC00273-27 | chr16:34739459-34739785 | NONHSAT142198 |
38 | lnc-LINC00273-25 | chr16:34713636-34713810 | NONHSAT142192 |
39 | lnc-CTD-2144E22.5.1-6 | chr16:34612943-34613184 | NONHSAT142183 |
40 | lnc-CTD-2144E22.5.1-6 | chr16:34612943-34613184 | ENSG00000259841.2 |
41 | lnc-CTD-2144E22.5.1-31 | chr16:34756490-34756676 | NONHSAT142207 |
42 | lnc-CTD-2144E22.5.1-5 | chr16:34487252-34487506 | ENSG00000260958.2 |
43 | lnc-CTD-2144E22.5.1-6 | chr16:34614340-34614458 | ENSG00000259841.2 |
44 | lnc-LINC00273-7 | chr16:34728125-34728568 | ENSG00000261445.1 |
45 | lnc-CTD-2144E22.5.1-6 | chr16:34614340-34614458 | NONHSAT142183 |
46 | lnc-CTD-2144E22.5.1-5 | chr16:34442330-34442392 | ENSG00000260958.2 |
47 | lnc-CTD-2144E22.5.1-6 | chr16:34612943-34613184 | ENSG00000259841.2 |
48 | lnc-CTD-2144E22.5.1-4 | chr16:34477709-34479085 | NONHSAT142171 |
49 | lnc-CTD-2144E22.5.1-5 | chr16:34482858-34483251 | NONHSAT142170 |
50 | lnc-CTD-2144E22.5.1-6 | chr16:34617082-34617226 | ENSG00000259841.2 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000259836 | TF binding region |
ENSG00000259897 | TF binding region |
ENSG00000221532 | TF binding region |
ENSG00000261752 | TF binding region |
ENSG00000260291 | TF binding region |
ENSG00000261299 | TF binding region |
ENSG00000261733 | TF binding region |
ENSG00000260857 | TF binding region |
ENSG00000261445 | TF binding region |
AGGF1P4 | TF binding region |
ENSG00000261350 | TF binding region |
ENSG00000214581 | TF binding region |
RARRES2P5 | TF binding region |
ENSG00000261274 | TF binding region |
RARRES2P7 | TF binding region |
RARRES2P6 | TF binding region |
ENSG00000260480 | TF binding region |
FGFR3P5 | TF binding region |
RARRES2P9 | TF binding region |
ENSG00000261046 | TF binding region |
ENSG00000264479 | TF binding region |
ENSG00000269622 | TF binding region |
ENSG00000260427 | TF binding region |
ENSG00000260341 | TF binding region |
ENSG00000260994 | TF binding region |
ENSG00000260598 | TF binding region |
ENSG00000260958 | TF binding region |
ENSG00000260153 | TF binding region |
ENSG00000259841 | TF binding region |
RARRES2P8 | TF binding region |
ENSG00000261711 | TF binding region |
ENSG00000260680 | TF binding region |
ENSG00000260846 | TF binding region |
ENSG00000259836 | CpG island |
ENSG00000259897 | CpG island |
ENSG00000221532 | CpG island |
ENSG00000261752 | CpG island |
ENSG00000260291 | CpG island |
ENSG00000261299 | CpG island |
ENSG00000261733 | CpG island |
ENSG00000260857 | CpG island |
ENSG00000261445 | CpG island |
AGGF1P4 | CpG island |
ENSG00000261350 | CpG island |
ENSG00000214581 | CpG island |
RARRES2P5 | CpG island |
ENSG00000261274 | CpG island |
RARRES2P7 | CpG island |
RARRES2P6 | CpG island |
ENSG00000260480 | CpG island |
FGFR3P5 | CpG island |
RARRES2P9 | CpG island |
ENSG00000261046 | CpG island |
ENSG00000264479 | CpG island |
ENSG00000269622 | CpG island |
ENSG00000260427 | CpG island |
ENSG00000260341 | CpG island |
ENSG00000260994 | CpG island |
ENSG00000260598 | CpG island |
ENSG00000260958 | CpG island |
ENSG00000260153 | CpG island |
ENSG00000259841 | CpG island |
RARRES2P8 | CpG island |
ENSG00000261711 | CpG island |
ENSG00000260680 | CpG island |
ENSG00000260846 | CpG island |
ENSG00000261398 | chromatin interactions |
ENSG00000137871 | chromatin interactions |
ENSG00000260073 | chromatin interactions |
ZNF451 | miRNA target sites |
ZNF407 | miRNA target sites |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs748250 | chr16:34437589-34437590 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
2 | rs564485522 | chr16:34437617-34437618 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
3 | rs576318846 | chr16:34437618-34437619 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
4 | rs541025275 | chr16:34437631-34437632 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
5 | rs559769634 | chr16:34437684-34437685 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
6 | rs543641894 | chr16:34437707-34437708 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
7 | rs562284931 | chr16:34437738-34437739 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
8 | rs60580821 | chr16:34437768-34437769 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
9 | rs369373796 | chr16:34437772-34437773 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
10 | rs559097979 | chr16:34437775-34437776 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
11 | rs532912346 | chr16:34437811-34437812 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
12 | rs189843444 | chr16:34437854-34437855 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
13 | rs60943089 | chr16:34437855-34437856 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
14 | rs530402743 | chr16:34437856-34437857 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
15 | rs537328205 | chr16:34437896-34437897 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
16 | rs7404459 | chr16:34437898-34437899 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
17 | rs372544081 | chr16:34437910-34437911 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
18 | rs193260909 | chr16:34437987-34437988 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
19 | rs7404474 | chr16:34438015-34438016 | ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
20 | rs554190775 | chr16:34438070-34438071 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
21 | rs572204025 | chr16:34438079-34438080 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
22 | rs369084964 | chr16:34438119-34438120 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
23 | rs539487242 | chr16:34438155-34438156 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
24 | rs185366996 | chr16:34438164-34438165 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
25 | rs576353955 | chr16:34438217-34438218 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
26 | rs543678849 | chr16:34438221-34438222 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
27 | rs562156967 | chr16:34438223-34438224 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
28 | rs574134900 | chr16:34438225-34438226 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
29 | rs540774554 | chr16:34438267-34438268 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
30 | rs189632997 | chr16:34438297-34438298 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
31 | rs1843651 | chr16:34438299-34438300 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
32 | rs545057999 | chr16:34438332-34438333 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
33 | rs563253434 | chr16:34438333-34438334 | ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
34 | rs572390974 | chr16:34438404-34438405 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs546600266 | chr16:34438437-34438438 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs552210341 | chr16:34438607-34438608 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs530848787 | chr16:34438662-34438663 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs549227118 | chr16:34438720-34438721 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs7186710 | chr16:34438740-34438741 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
40 | rs528335139 | chr16:34438758-34438759 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs373340818 | chr16:34438782-34438783 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs565869283 | chr16:34438798-34438799 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs180790252 | chr16:34438809-34438810 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs539523802 | chr16:34438816-34438817 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs557749471 | chr16:34438836-34438837 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs151129286 | chr16:34438863-34438864 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs185594557 | chr16:34438910-34438911 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs555982589 | chr16:34438956-34438957 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs574250203 | chr16:34438989-34438990 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs568398520 | chr16:34439017-34439018 | Weak transcription | TF binding region | 2 gene(s) | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 17133270 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Lung adenocarcinoma | 17086460 | CNVD |
Lung cancer | 17086460 | CNVD |
Autism | 22566537 | CNVD |
Intellectual disability | 22566537 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 17603634 | CNVD |
Breast cancer | 21264507 | CNVD |
Cervical cancer | 21063398 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Autism | 19415332 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Schizophrenia | 22958593 | CNVD |
Ductal carcinoma | 22052326 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 20668451 | CNVD |
Cancer | 20668451 | CNVD |
Lung cancer | 20668451 | CNVD |
Ovarian cancer | 20668451 | CNVD |
Pancreas cancer | 20668451 | CNVD |
Prostate cancer | 20668451 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Breast cancer | 21858162 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Breast cancer | 21785460 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Benign familial neonatal-infantile seizures | 21060786 | CNVD |
Low-grade fibromyxoid sarcoma | 0 | CNVD |
Cancer | 21183584 | CNVD |
Disorders of sex development | 21048976 | CNVD |
Low-grade fibromyxoid sarcoma | 21536545 | CNVD |
Breast cancer | 21045282 | CNVD |
Neuroblastoma | 20406844 | CNVD |
Autism | 19050728 | CNVD |
Epilepsy | 20923578 | CNVD |
Psychiatric disorder | 19050728 | CNVD |
Schizophrenia | 19348701 | CNVD |
Attention deficit hyperactivity disorder | 19097825 | CNVD |
Autism | 20964600 | CNVD |
Schizophrenia | 19955444 | CNVD |
Schizophrenia | 18990708 | CNVD |
Schizophrenia | 19571808 | CNVD |
Breast cancer | 20409316 | CNVD |
Severe combined immunodeficiency | 19097825 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Autism | 18522746 | CNVD |
Wilms tumour | 21544195 | CNVD |
Cancer | 20164920 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Breast cancer | 21364760 | CNVD |
Renal cell carcinoma | 18194544 | CNVD |
Lung cancer | 18438408 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Breast cancer | 21509527 | CNVD |
Schizophrenia | 20967226 | CNVD |
Williams Syndrome | 20824207 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Schizophrenia | 23813976 | CNVD |
Bipolar disorder | 19214233 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Rett syndrome | 21593744 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Autism | 19287141 | CNVD |
Prostate cancer | 18632612 | CNVD |
Cancer | 20164919 | CNVD |
Breast cancer | 22522925 | CNVD |
Autism | 18414403 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:34437400-34438400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
2 | chr16:34438400-34441200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
3 | chr16:34441200-34442800 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
4 | chr16:34441400-34442600 | Bivalent/Poised TSS | ES-I3 Cell Line | embryonic stem cell |
5 | chr16:34442000-34443200 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
6 | chr16:34442200-34443000 | Active TSS | ES-WA7 Cell Line | embryonic stem cell |
7 | chr16:34442200-34443000 | ZNF genes & repeats | Foreskin Melanocyte Primary Cells skin01 | Skin |
8 | chr16:34442600-34442800 | Active TSS | ES-I3 Cell Line | embryonic stem cell |
9 | chr16:34456000-34456800 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
10 | chr16:34456200-34456400 | ZNF genes & repeats | Gastric | stomach |
11 | chr16:34456200-34456600 | Active TSS | H1 Derived Mesenchymal Stem Cells | ES cell derived |
12 | chr16:34465600-34466200 | Active TSS | ES-I3 Cell Line | embryonic stem cell |
13 | chr16:34465600-34466200 | ZNF genes & repeats | HUES6 Cell Line | embryonic stem cell |
14 | chr16:34466600-34472200 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
15 | chr16:34466800-34467000 | ZNF genes & repeats | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
16 | chr16:34466800-34469400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
17 | chr16:34467000-34468200 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
18 | chr16:34467000-34470200 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
19 | chr16:34468200-34469400 | ZNF genes & repeats | Brain Germinal Matrix | brain |
20 | chr16:34474800-34476000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
21 | chr16:34478600-34479000 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
22 | chr16:34480400-34481000 | Enhancers | Adipose Nuclei | Adipose |
23 | chr16:34489600-34490400 | ZNF genes & repeats | HUES6 Cell Line | embryonic stem cell |
24 | chr16:34489600-34490800 | Active TSS | ES-I3 Cell Line | embryonic stem cell |
25 | chr16:34489800-34490200 | Active TSS | ES-WA7 Cell Line | embryonic stem cell |
26 | chr16:34492800-34493400 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
27 | chr16:34505000-34507800 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
28 | chr16:34517800-34518400 | ZNF genes & repeats | HUES64 Cell Line | embryonic stem cell |
29 | chr16:34531200-34534000 | Enhancers | HMEC | breast |
30 | chr16:34531400-34534200 | Enhancers | NHEK | skin |
31 | chr16:34531800-34532400 | Active TSS | Fetal Heart | heart |
32 | chr16:34533800-34534000 | Enhancers | Esophagus | oesophagus |
33 | chr16:34534200-34538800 | Weak transcription | NHEK | skin |
34 | chr16:34535000-34537200 | Weak transcription | Esophagus | oesophagus |
35 | chr16:34537000-34537400 | ZNF genes & repeats | Fetal Heart | heart |
36 | chr16:34537200-34537400 | Enhancers | Esophagus | oesophagus |
37 | chr16:34537400-34542200 | Weak transcription | Esophagus | oesophagus |
38 | chr16:34538000-34538800 | Active TSS | Fetal Heart | heart |
39 | chr16:34538600-34544000 | Enhancers | HMEC | breast |
40 | chr16:34538800-34539600 | ZNF genes & repeats | HUES48 Cell Line | embryonic stem cell |
41 | chr16:34538800-34543800 | Enhancers | NHEK | skin |
42 | chr16:34539400-34539800 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
43 | chr16:34539800-34540200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
44 | chr16:34540200-34540400 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
45 | chr16:34540400-34542800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
46 | chr16:34542200-34543000 | Enhancers | Esophagus | oesophagus |
47 | chr16:34542200-34546800 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
48 | chr16:34542800-34543000 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
49 | chr16:34542800-34543600 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
50 | chr16:34543000-34543400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |