Variant report

Variant	esv2752093
Chromosome Location	chr6:162321377-162709948
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:40)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:40 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:162620407..162622935-chr6:162623040..162625617,2	K562	blood:
2	chr6:162574333..162576032-chr6:162578404..162580150,2	K562	blood:
3	chr6:162500411..162502828-chr6:162504694..162507642,2	K562	blood:
4	chr6:162661286..162663139-chr6:162673530..162675376,2	K562	blood:
5	chr6:162350457..162353351-chr6:162353923..162356207,2	K562	blood:
6	chr6:162372183..162373880-chr6:162375416..162378006,2	K562	blood:
7	chr6:162525404..162526979-chr6:162529518..162531928,2	MCF-7	breast:
8	chr6:162347118..162349182-chr6:162351860..162355211,3	K562	blood:
9	chr6:162552000..162556573-chr6:162556763..162561114,5	K562	blood:
10	chr6:162258059..162258779-chr6:162552660..162553528,2	MCF-7	breast:
11	chr6:162436271..162438282-chr6:162512437..162514970,2	K562	blood:
12	chr6:162350457..162353351-chr6:162353923..162356207,2	K562	blood:
13	chr6:162397480..162399223-chr6:162401761..162404565,2	K562	blood:
14	chr6:162643217..162645721-chr6:162646719..162648950,2	K562	blood:
15	chr6:162552000..162556573-chr6:162556763..162561114,5	K562	blood:
16	chr6:162666890..162668464-chr6:162670216..162671922,2	K562	blood:
17	chr3:66689243..66689865-chr6:162514238..162514739,2	MCF-7	breast:
18	chr6:162380873..162382939-chr6:162388150..162390123,2	K562	blood:
19	chr6:162372183..162373880-chr6:162375416..162378006,2	K562	blood:
20	chr6:162613600..162615384-chr6:162617227..162618872,2	K562	blood:
21	chr6:162436271..162438282-chr6:162512437..162514970,2	K562	blood:
22	chr6:162397480..162399223-chr6:162401761..162404565,2	K562	blood:
23	chr6:162400767..162402435-chr6:162406575..162409112,2	K562	blood:
24	chr6:162347118..162349182-chr6:162351860..162355211,3	K562	blood:
25	chr6:162671180..162673472-chr6:162808694..162811227,2	K562	blood:
26	chr6:162553757..162556831-chr6:162558713..162560436,3	K562	blood:
27	chr6:162400767..162402435-chr6:162406575..162409112,2	K562	blood:
28	chr6:162643217..162645721-chr6:162646719..162648950,2	K562	blood:
29	chr6:162620407..162622935-chr6:162623040..162625617,2	K562	blood:
30	chr6:162613600..162615384-chr6:162617227..162618872,2	K562	blood:
31	chr6:162470841..162473078-chr6:162475586..162477804,2	MCF-7	breast:
32	chr6:162666890..162668464-chr6:162670216..162671922,2	K562	blood:
33	chr6:162258117..162258784-chr6:162338530..162339165,2	MCF-7	breast:
34	chr6:162470841..162473078-chr6:162475586..162477804,2	MCF-7	breast:
35	chr6:162525404..162526979-chr6:162529518..162531928,2	MCF-7	breast:
36	chr6:162661286..162663139-chr6:162673530..162675376,2	K562	blood:
37	chr6:162500411..162502828-chr6:162504694..162507642,2	K562	blood:
38	chr6:162574333..162576032-chr6:162578404..162580150,2	K562	blood:
39	chr6:162553757..162556831-chr6:162558713..162560436,3	K562	blood:
40	chr6:162380873..162382939-chr6:162388150..162390123,2	K562	blood:

No data

Extended variants
information (count: 14321 )
Associated
traits (count: 107 )

Variant overlapped rSNPs/rCNVs (count:14321 , 50 per page) page: 1 2 3 4 5 6 7 ... 287

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9355371	chr6:162321377-162321378	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs549007744	chr6:162321389-162321390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs77893464	chr6:162321394-162321395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs528568509	chr6:162321473-162321474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs551531175	chr6:162321521-162321522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs12192115	chr6:162321546-162321547	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs200486246	chr6:162321587-162321588	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs34248701	chr6:162321588-162321589	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs386409176	chr6:162321591-162321592	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs397771438	chr6:162321592-162321593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs537688077	chr6:162321627-162321628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs550973201	chr6:162321640-162321641	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs567997547	chr6:162321643-162321644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs536242552	chr6:162321645-162321646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs553011832	chr6:162321648-162321649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs555309773	chr6:162321666-162321667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs111210763	chr6:162321679-162321680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs373170708	chr6:162321705-162321706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs377403557	chr6:162321709-162321710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs9355957	chr6:162321716-162321717	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs538757509	chr6:162321719-162321720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs558684444	chr6:162321720-162321721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs565360145	chr6:162321755-162321756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs201246973	chr6:162321810-162321811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs72213287	chr6:162321811-162321812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs61013973	chr6:162321818-162321819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs113808552	chr6:162321827-162321828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs183320392	chr6:162321839-162321840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs377407497	chr6:162321942-162321943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs9365345	chr6:162321944-162321945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs199852188	chr6:162321958-162321959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs377615355	chr6:162321960-162321961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs59141220	chr6:162321961-162321962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs150731774	chr6:162321980-162321981	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs574402504	chr6:162322040-162322041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs6917019	chr6:162322115-162322116	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs559344168	chr6:162322130-162322131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs528532133	chr6:162322191-162322192	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs551571448	chr6:162322247-162322248	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs369826125	chr6:162322248-162322249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs565409146	chr6:162322249-162322250	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs531010421	chr6:162322258-162322259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs555503105	chr6:162322259-162322260	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs574074662	chr6:162322303-162322304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs191863078	chr6:162322313-162322314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs9355958	chr6:162322332-162322333	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
47	rs149493379	chr6:162322348-162322349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs376999191	chr6:162322349-162322350	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs556629514	chr6:162322381-162322382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs575300079	chr6:162322400-162322401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:107)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Cancer	20164920	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	20838587	CNVD
Early-onset parkinson disease	21993715	CNVD
Glioblastoma	18772890	CNVD
Pancreatic cancer	20981101	CNVD
Autism	21360662	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Intellectual disability	22102821	CNVD
Parkinson disease	0	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Schizophrenia	20967226	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	23813976	CNVD
early-passage human iPS cells	21368824	CNVD
Parkinson disease	21829596	CNVD
Gastric cancer	22315472	CNVD
Autism	19404257	CNVD
Schizophrenia	21346763	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Attention deficit hyperactivity disorder	19546859	CNVD
Autism	22495309	CNVD
Glioblastoma multiforme	21138945	CNVD

Chromatin state (count:1059 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:162310000-162327200	Weak transcription	Right Ventricle	heart
2	chr6:162316200-162322600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:162318200-162322600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:162322600-162323000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:162322600-162323200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:162322800-162323200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:162322800-162323200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:162322800-162323200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:162322800-162323400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:162322800-162323400	Enhancers	Fetal Stomach	stomach
11	chr6:162322800-162323600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:162323000-162323400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:162323200-162325800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:162323600-162324200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:162324000-162324200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr6:162324200-162324400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:162324200-162329800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:162324800-162325000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:162325000-162325200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:162325200-162327200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:162325800-162326000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:162326000-162329800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr6:162327000-162328200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:162327200-162328200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:162327400-162328000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr6:162327400-162328200	Enhancers	Primary hematopoietic stem cells	blood
27	chr6:162329800-162330200	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr6:162329800-162330400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr6:162329800-162330600	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr6:162329800-162330800	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr6:162330000-162330400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:162330200-162330400	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr6:162330200-162333200	Weak transcription	Psoas Muscle	Psoas
34	chr6:162330400-162331800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:162330400-162338800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr6:162332200-162332400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:162336200-162343400	Weak transcription	Fetal Heart	heart
38	chr6:162336200-162357200	Weak transcription	Aorta	Aorta
39	chr6:162338600-162338800	Enhancers	NH-A	brain
40	chr6:162338600-162339000	Enhancers	A549	lung
41	chr6:162338600-162339200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:162338600-162339200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr6:162338600-162339800	Enhancers	Brain Germinal Matrix	brain
44	chr6:162338800-162339000	Active TSS	Hela-S3	cervix
45	chr6:162338800-162339400	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr6:162338800-162340000	Flanking Active TSS	NH-A	brain
47	chr6:162339000-162339400	Flanking Active TSS	A549	lung
48	chr6:162339000-162339400	Flanking Active TSS	Hela-S3	cervix
49	chr6:162339000-162340200	Active TSS	Brain Inferior Temporal Lobe	brain
50	chr6:162339000-162340200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links