Variant report

Variant	esv275232
Chromosome Location	chr1:159452759-159456338
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:159446498..159448830-chr1:159451407..159454063,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR10J1-1	chr1:159452694-159453166	XLOC_000430

Variant related genes	Relation type
IL7	miRNA target sites

Extended variants
information (count: 150 )
Associated
traits (count: 109 )

Variant overlapped rSNPs/rCNVs (count:150 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs574867255	chr1:159452771-159452772	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs535888682	chr1:159452783-159452784	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs186658425	chr1:159452812-159452813	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs572389496	chr1:159452876-159452877	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs545934925	chr1:159452921-159452922	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs562361294	chr1:159452947-159452948	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs564132949	chr1:159452952-159452953	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs113946562	chr1:159452959-159452960	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs576226546	chr1:159452998-159452999	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs73013355	chr1:159453085-159453086	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs192919186	chr1:159453151-159453152	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs562545109	chr1:159453174-159453175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs547011247	chr1:159453183-159453184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs560367702	chr1:159453184-159453185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs73013357	chr1:159453185-159453186	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs552875270	chr1:159453192-159453193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs570955996	chr1:159453204-159453205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs76546294	chr1:159453205-159453206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs549995194	chr1:159453244-159453245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs7556355	chr1:159453252-159453253	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs11265208	chr1:159453314-159453315	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs56244009	chr1:159453326-159453327	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs55836400	chr1:159453327-159453328	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs376566681	chr1:159453347-159453348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs539341472	chr1:159453398-159453399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs113732845	chr1:159453416-159453417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs7519283	chr1:159453419-159453420	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs145027107	chr1:159453426-159453427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs543636532	chr1:159453440-159453441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs561410822	chr1:159453475-159453476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs184964218	chr1:159453483-159453484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs189812209	chr1:159453531-159453532	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs200201100	chr1:159453554-159453555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs555897072	chr1:159453570-159453571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs55968822	chr1:159453571-159453572	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs4328070	chr1:159453609-159453610	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs532992311	chr1:159453610-159453611	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs35501602	chr1:159453625-159453626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs139006148	chr1:159453658-159453659	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs376875063	chr1:159453660-159453661	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs550213579	chr1:159453676-159453677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs564837133	chr1:159453682-159453683	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs547044301	chr1:159453689-159453690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs550368102	chr1:159453725-159453726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs72715685	chr1:159453748-159453749	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs56380934	chr1:159453749-159453750	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs181864317	chr1:159453780-159453781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs566075154	chr1:159453792-159453793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs539847519	chr1:159453832-159453833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs557752283	chr1:159453896-159453897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:109)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Liposarcoma	21253554	CNVD
Non-small cell lung cancer	21385341	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	18698080	CNVD
Melanoma	18172304	CNVD
Cervical cancer	21062161	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	21183584	CNVD
Multiple myeloma	16461302	CNVD
Lung cancer	18438408	CNVD
Rett syndrome	21593744	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Medulloblastoma	21979893	CNVD
Systemic lupus erythematosus	21956041	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Non-small cell lung cancer	21829676	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	17899364	CNVD
Bladder cancer	19088036	CNVD
Ovarian neoplasms	16753589	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	21858162	CNVD
Retinoblastoma	19183342	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Type 2 diabetes	19141583	CNVD
Chordoma	18071362	CNVD
Hepatocellular carcinoma	18803288	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Urothelial carcinoma	21177765	CNVD
Burkitt''s lymphoma	19759907	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Bladder cancer	21909424	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Testicular germ cell tumor	18059402	CNVD
Trisomy 5 syndrome	21098271	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21611746	CNVD
Neuroblastoma	18923191	CNVD
Systemic lupus erythematosus	19220326	CNVD
Systemic lupus erythematosus	19287148	CNVD
Glomerulonephritis	19341492	CNVD
Systemic lupus erythematosus	18559452	CNVD
Systemic autoimmune disease	17597778	CNVD
Glomerulonephritis	17008540	CNVD
Glomerulonephritis	16482158	CNVD
Soft tissue tumor	16732325	CNVD
Cancer	17060936	CNVD
Lung cancer	16740712	CNVD
Breast cancer	21045282	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Cancer	20164920	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Follicular lymphoma	18703704	CNVD
Myelofibrosis	22110671	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	19602461	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:159440400-159456600	Weak transcription	Liver	Liver
2	chr1:159445400-159461800	Weak transcription	Muscle Satellite Cultured Cells	--

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