Variant report

Variant	esv275295
Chromosome Location	chr1:217489760-217493110
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:217489631..217491711-chr1:217492316..217493917,2	MCF-7	breast:
2	chr1:217493104..217494890-chr1:217497879..217500078,3	MCF-7	breast:
3	chr1:217488664..217491578-chr1:217492799..217494581,2	K562	blood:
4	chr1:217489631..217491711-chr1:217492316..217493917,2	MCF-7	breast:
5	chr1:217488664..217491578-chr1:217492799..217494581,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs543564852	chr1:217491021-217491022	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs2815207	chr1:217491035-217491036	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs141269785	chr1:217491068-217491069	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs543132488	chr1:217491081-217491082	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs189067831	chr1:217491086-217491087	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs6697768	chr1:217491097-217491098	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs371487348	chr1:217491115-217491116	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs564323559	chr1:217491144-217491145	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs533271113	chr1:217491154-217491155	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs549965764	chr1:217491163-217491164	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs569887063	chr1:217491164-217491165	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs181438389	chr1:217491192-217491193	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs371144335	chr1:217491198-217491199	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs549096450	chr1:217491206-217491207	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs17717226	chr1:217491254-217491255	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs534662158	chr1:217491289-217491290	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs557472213	chr1:217491293-217491294	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs571570126	chr1:217491330-217491331	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs543241920	chr1:217492823-217492824	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs561922867	chr1:217492836-217492837	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs186044330	chr1:217492917-217492918	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs2815210	chr1:217492985-217492986	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Breast cancer	17603634	CNVD
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Medulloblastoma	21979893	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Liposarcoma	21253554	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Urothelial carcinoma	21177765	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chordoma	18071362	CNVD
Multiple myeloma	16461302	CNVD
van der Woude syndrome	22470819	CNVD
van der Woude syndrome	20818247	CNVD
T-cell lymphomas	19863542	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hepatocellular carcinoma	18803288	CNVD
Urothelial tumor	18831757	CNVD
Lung cancer	18438408	CNVD
Ovarian cancer	21720365	CNVD
small cell lung cancer	20016488	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Medulloblastoma	16783165	CNVD
Basal cell lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Holoprosencephaly	19184110	CNVD
Breast cancer	21069454	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Mental retardation	19951919	CNVD
Non-syndromic sensorineural hearing loss	17873649	CNVD
Acute myeloid leukemia	17268525	CNVD
Lung cancer	16740712	CNVD
Renal cell carcinoma	18765545	CNVD
Basal cell lymphoma	17053054	CNVD
Developmental delay	21147756	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	14699429	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217491000-217491400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr1:217492800-217493000	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links