Variant report

Variant	esv275328
Chromosome Location	chr7:109659225-109681144
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LRRN3-4	chr7:109659312-109659557	NONHSAT122758

Extended variants
information (count: 110 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:110 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs35910146	chr7:109659225-109659226	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs562121825	chr7:109659266-109659267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs139775604	chr7:109659339-109659340	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs550473550	chr7:109659447-109659448	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs570653262	chr7:109659450-109659451	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs533060571	chr7:109659476-109659477	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs116512609	chr7:109659482-109659483	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs369161043	chr7:109659537-109659538	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs566128586	chr7:109659559-109659560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs535038571	chr7:109659579-109659580	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs554952720	chr7:109659622-109659623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs36002969	chr7:109659634-109659635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs116021519	chr7:109659673-109659674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs547332377	chr7:109659676-109659677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs77755059	chr7:109659685-109659686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs116367087	chr7:109659686-109659687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs577403888	chr7:109659698-109659699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs201522806	chr7:109659704-109659705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs199618395	chr7:109659705-109659706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs67276353	chr7:109659706-109659707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs111724512	chr7:109659710-109659711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs553653911	chr7:109659713-109659714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs539624676	chr7:109659716-109659717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs144917897	chr7:109659778-109659779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs192889589	chr7:109659787-109659788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs35346438	chr7:109659884-109659885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs562085308	chr7:109659887-109659888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs531003439	chr7:109659888-109659889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs544726094	chr7:109659892-109659893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs183203679	chr7:109659893-109659894	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs558021098	chr7:109659915-109659916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs569971805	chr7:109659937-109659938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs569883171	chr7:109659974-109659975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs571364781	chr7:109667201-109667202	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs533609927	chr7:109667270-109667271	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs184269772	chr7:109667282-109667283	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs149515813	chr7:109667298-109667299	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs115069496	chr7:109667364-109667365	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs571048236	chr7:109667455-109667456	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs538240953	chr7:109667461-109667462	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs4730411	chr7:109667487-109667488	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs148692802	chr7:109667526-109667527	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs35044406	chr7:109667534-109667535	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs557876180	chr7:109667543-109667544	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs577705033	chr7:109667544-109667545	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs12539092	chr7:109667548-109667549	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs553527741	chr7:109667562-109667563	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs73714028	chr7:109667576-109667577	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs142214501	chr7:109667590-109667591	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs373606171	chr7:109667593-109667594	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	16864856	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Metanephric adenoma	20802469	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
Myelodysplastic syndrome	21251322	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21785460	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	17053054	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
Melanoma	17363583	CNVD
Myelofibrosis	22110671	CNVD
Squamous cell cancer	20885788	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	16397240	CNVD
Biliary cancer	19435499	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Prostate cancer	23792589	CNVD
Adenocarcinoma	21044232	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Autism	19401682	CNVD
Non-small cell lung cancer	19889201	CNVD
Acute myeloid leukemia	18000384	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Metastatic melanoma	18483359	CNVD
Autism	18414403	CNVD
Autism	19546859	CNVD
Schizophrenia	19546859	CNVD
Tourette syndrome	19546859	CNVD
Melanoma	19188590	CNVD
small cell lung cancer	20016488	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109657800-109660000	Weak transcription	Dnd41	blood
2	chr7:109667200-109667800	Enhancers	Fetal Lung	lung
3	chr7:109669400-109670200	Enhancers	Dnd41	blood

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