Variant report

Variant	esv2753625
Chromosome Location	chr9:15914055-15980320
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SNAPC3-1	chr9:15920268-15920420	NONHSAT130279
2	lnc-SNAPC3-1	chr9:15922109-15922200	NONHSAT130279

Extended variants
information (count: 2981 )
Associated
traits (count: 92 )

Variant overlapped rSNPs/rCNVs (count:2981 , 50 per page) page: 1 2 3 4 5 6 7 ... 60

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2094520	chr9:15914055-15914056	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs573388382	chr9:15914056-15914057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs371685910	chr9:15914070-15914071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs543897314	chr9:15914080-15914081	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs562527369	chr9:15914096-15914097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs183221643	chr9:15914126-15914127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs530521130	chr9:15914128-15914129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs200547183	chr9:15914129-15914130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs530958125	chr9:15914174-15914175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs550667669	chr9:15914189-15914190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs554136483	chr9:15914194-15914195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs551663906	chr9:15914250-15914251	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs560443672	chr9:15914279-15914280	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs527530813	chr9:15914292-15914293	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs549188927	chr9:15914295-15914296	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs567794291	chr9:15914312-15914313	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs2987058	chr9:15914335-15914336	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs146328267	chr9:15914348-15914349	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs571628240	chr9:15914351-15914352	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs567336414	chr9:15914378-15914379	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs187130027	chr9:15914409-15914410	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs374874889	chr9:15914439-15914440	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs572400321	chr9:15914453-15914454	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs191508146	chr9:15914456-15914457	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs3008695	chr9:15914472-15914473	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs576535198	chr9:15914481-15914482	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs544313838	chr9:15914513-15914514	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs566715833	chr9:15914517-15914518	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs2987059	chr9:15914526-15914527	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs111497967	chr9:15914529-15914530	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs535813687	chr9:15914540-15914541	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs544676512	chr9:15914544-15914545	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs538947349	chr9:15914557-15914558	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs371208010	chr9:15914558-15914559	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs368652908	chr9:15914568-15914569	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs116822116	chr9:15914590-15914591	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs575219856	chr9:15914592-15914593	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs542870049	chr9:15914595-15914596	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs3008693	chr9:15914605-15914606	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs3008692	chr9:15914668-15914669	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs142516197	chr9:15914671-15914672	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs527242071	chr9:15914694-15914695	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs571602829	chr9:15914703-15914704	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs115433273	chr9:15914705-15914706	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs547373039	chr9:15914715-15914716	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs183374847	chr9:15914775-15914776	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs10122085	chr9:15914790-15914791	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs3008691	chr9:15914803-15914804	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs373174520	chr9:15914804-15914805	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs542960459	chr9:15914813-15914814	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:92)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
abnormal development	18461090	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21611746	CNVD
Glycine encephalopathy	21572526	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	19835627	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15902000-15914200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:15914200-15915800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:15914200-15916000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:15914400-15915000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:15914400-15915200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr9:15915800-15920800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:15916000-15920600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:15918200-15930800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:15920000-15936000	Weak transcription	Ovary	ovary
10	chr9:15920600-15922800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:15920800-15922800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:15921600-15924800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:15922800-15930800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr9:15922800-15931600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:15923000-15929600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr9:15926400-15928000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr9:15926400-15928200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:15926400-15928400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:15926600-15927600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:15926800-15927800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:15926800-15927800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:15927000-15927600	Enhancers	Osteobl	bone
23	chr9:15927200-15927400	Enhancers	HSMM	muscle
24	chr9:15927200-15928000	Enhancers	NHDF-Ad	bronchial
25	chr9:15927400-15934800	Weak transcription	HSMM	muscle
26	chr9:15928000-15932600	Weak transcription	NHDF-Ad	bronchial
27	chr9:15930400-15938600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:15930800-15931600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:15930800-15933200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:15931400-15931800	Weak transcription	Primary hematopoietic stem cells	blood
31	chr9:15931600-15933200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:15932600-15933200	ZNF genes & repeats	NHDF-Ad	bronchial
33	chr9:15933200-15934200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:15933200-15934400	Weak transcription	NHDF-Ad	bronchial
35	chr9:15933200-15951400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:15934200-15936800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:15934400-15935800	Enhancers	NHDF-Ad	bronchial
38	chr9:15934600-15935400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr9:15934600-15938000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr9:15934800-15935000	Enhancers	Fetal Kidney	kidney
41	chr9:15934800-15935200	Genic enhancers	HSMM	muscle
42	chr9:15934800-15936000	Enhancers	Muscle Satellite Cultured Cells	--
43	chr9:15934800-15936600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr9:15934800-15937200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr9:15934800-15937800	Enhancers	Osteobl	bone
46	chr9:15935000-15936000	Weak transcription	Fetal Kidney	kidney
47	chr9:15935000-15936800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr9:15935200-15937000	Enhancers	HSMM	muscle
49	chr9:15935200-15937200	Enhancers	Brain Germinal Matrix	brain
50	chr9:15935200-15937200	Enhancers	NHLF	lung

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