Variant report

Variant	esv2754472
Chromosome Location	chr11:25760321-25793308
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANO3-3	chr11:25762023-25762107	ENSG00000254456
2	lnc-ANO3-3	chr11:25792018-25792115	ENSG00000254456
3	lnc-ANO3-3	chr11:25792018-25792115	NONHSAT018451
4	lnc-ANO3-3	chr11:25788759-25788835	ENSG00000254456
5	lnc-ANO3-3	chr11:25792018-25792115	ENSG00000254456
6	lnc-ANO3-3	chr11:25762023-25762107	ENSG00000254456
7	lnc-ANO3-3	chr11:25788759-25788835	NONHSAT018451
8	lnc-ANO3-3	chr11:25762023-25762107	NONHSAT018451

No data

Extended variants
information (count: 432 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:432 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs141270231	chr11:25762046-25762047	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs569472828	chr11:25762060-25762061	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs143676869	chr11:25767010-25767011	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs11028903	chr11:25767069-25767070	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs11028904	chr11:25767103-25767104	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs12292176	chr11:25767105-25767106	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs117628000	chr11:25767123-25767124	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs186390922	chr11:25767161-25767162	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs536069805	chr11:25767162-25767163	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs11028905	chr11:25767223-25767224	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs190700943	chr11:25767261-25767262	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs2172581	chr11:25767313-25767314	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs181516865	chr11:25767352-25767353	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs146494933	chr11:25767357-25767358	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs186354180	chr11:25767374-25767375	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs78419942	chr11:25767396-25767397	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs569800945	chr11:25767397-25767398	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs2131662	chr11:25767455-25767456	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs558836778	chr11:25767459-25767460	Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs577201316	chr11:25767462-25767463	Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs191259087	chr11:25767492-25767493	Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs574749465	chr11:25767496-25767497	Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs182953194	chr11:25767500-25767501	Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs386751824	chr11:25767516-25767517	Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs11823039	chr11:25767517-25767518	Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs577496610	chr11:25767533-25767534	Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs200902984	chr11:25767543-25767544	Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs139293139	chr11:25767544-25767545	Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs375507947	chr11:25767548-25767549	Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs544599980	chr11:25767549-25767550	Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs10834781	chr11:25767552-25767553	Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs77564687	chr11:25767553-25767554	Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs10834782	chr11:25767558-25767559	Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs545975792	chr11:25767562-25767563	Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs78804355	chr11:25767563-25767564	Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs189616381	chr11:25767577-25767578	Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs528662718	chr11:25767592-25767593	Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs533871196	chr11:25767603-25767604	Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs149085705	chr11:25767606-25767607	Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs183396357	chr11:25767615-25767616	Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs142242881	chr11:25767632-25767633	Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs547904554	chr11:25767686-25767687	Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs2131663	chr11:25767712-25767713	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs537183709	chr11:25767717-25767718	Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs552313036	chr11:25767722-25767723	Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs10501023	chr11:25773819-25773820	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs10501024	chr11:25773863-25773864	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs184186400	chr11:25773869-25773870	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs570510631	chr11:25773893-25773894	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs528302380	chr11:25773894-25773895	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25767000-25767400	Enhancers	Hela-S3	cervix
2	chr11:25767400-25767800	Active TSS	Hela-S3	cervix
3	chr11:25773800-25774800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:25774800-25775200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:25777400-25778000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:25777400-25778200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:25777600-25778000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:25778000-25779600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:25779600-25780600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:25779600-25780800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:25788600-25789200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:25789000-25789200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr11:25789200-25790200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr11:25790200-25791000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr11:25790400-25791400	Enhancers	Hela-S3	cervix
16	chr11:25790600-25791200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr11:25790600-25791200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:25790600-25791400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:25791000-25791800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr11:25791200-25791800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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