Variant report

Variant	esv2755346
Chromosome Location	chr4:10272093-10275982
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr4:10273213-10273430	K562	blood:	n/a	n/a
2	CTCF	chr4:10273284-10273382	K562	blood:	n/a	n/a
3	E2F4	chr4:10273012-10273166	MCF10A-Er-Src	breast:	n/a	n/a
4	E2F4	chr4:10274558-10275032	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr4:10274606-10275143	MCF10A-Er-Src	breast:	n/a	chr4:10274960-10274970 chr4:10274961-10274969 chr4:10274960-10274970
6	FOS	chr4:10274597-10275143	MCF10A-Er-Src	breast:	n/a	chr4:10274960-10274970 chr4:10274961-10274969 chr4:10274960-10274970
7	FOS	chr4:10274596-10275143	MCF10A-Er-Src	breast:	n/a	chr4:10274960-10274970 chr4:10274961-10274969 chr4:10274960-10274970
8	FOS	chr4:10274631-10275073	MCF10A-Er-Src	breast:	n/a	chr4:10274960-10274970 chr4:10274961-10274969 chr4:10274960-10274970
9	MAFF	chr4:10275736-10275972	HepG2	liver:	n/a	chr4:10275860-10275878
10	MAFK	chr4:10275735-10275992	HepG2	liver:	n/a	chr4:10275861-10275876
11	MAFK	chr4:10275729-10276017	HepG2	liver:	n/a	chr4:10275861-10275876
12	MYC	chr4:10274631-10275351	MCF10A-Er-Src	breast:	n/a	n/a
13	MYC	chr4:10274623-10275000	MCF10A-Er-Src	breast:	n/a	n/a
14	POLR2A	chr4:10274942-10274959	MCF10A-Er-Src	breast:	n/a	n/a
15	STAT3	chr4:10274649-10274998	MCF10A-Er-Src	breast:	n/a	n/a
16	STAT3	chr4:10274655-10274855	MCF10A-Er-Src	breast:	n/a	n/a
17	STAT3	chr4:10274622-10275053	MCF10A-Er-Src	breast:	n/a	n/a
18	STAT3	chr4:10274619-10274936	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:10271663..10274322-chr4:10278537..10280895,2	K562	blood:
2	chr4:10266281..10269337-chr4:10269908..10272870,3	K562	blood:
3	chr4:10274788..10276860-chr4:10285063..10286717,2	K562	blood:
4	chr4:10271663..10276718-chr4:10277557..10282432,8	K562	blood:
5	chr4:10266886..10269236-chr4:10273082..10275523,2	K562	blood:

Variant related genes	Relation type
ENSG00000250074	TF binding region

Extended variants
information (count: 280 )
Associated
traits (count: 52 )

Variant overlapped rSNPs/rCNVs (count:280 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10489075	chr4:10272093-10272094	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs532489708	chr4:10272099-10272100	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs370844326	chr4:10272104-10272105	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs573160212	chr4:10272116-10272117	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs541076843	chr4:10272134-10272135	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs540443695	chr4:10272199-10272200	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs151247921	chr4:10272240-10272241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs573435581	chr4:10272244-10272245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs543961878	chr4:10272257-10272258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs562549626	chr4:10272266-10272267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs6833035	chr4:10272269-10272270	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs544946772	chr4:10272272-10272273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs560468751	chr4:10272280-10272281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs530241059	chr4:10272297-10272298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs550558080	chr4:10272303-10272304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs181572708	chr4:10272310-10272311	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs186503455	chr4:10272326-10272327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs567455365	chr4:10272339-10272340	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs527889378	chr4:10272347-10272348	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs550795611	chr4:10272375-10272376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs191346783	chr4:10272392-10272393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs569856173	chr4:10272401-10272402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs181187226	chr4:10272418-10272419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs6833292	chr4:10272429-10272430	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs149746169	chr4:10272460-10272461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs570662531	chr4:10272472-10272473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs534574472	chr4:10272522-10272523	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs7691156	chr4:10272537-10272538	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs190615390	chr4:10272544-10272545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs544744320	chr4:10272570-10272571	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs7676442	chr4:10272591-10272592	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs10489074	chr4:10272605-10272606	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
33	rs374269625	chr4:10272656-10272657	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs145670914	chr4:10272664-10272665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs544698818	chr4:10272665-10272666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs560166876	chr4:10272675-10272676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs527621255	chr4:10272697-10272698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs542935428	chr4:10272719-10272720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs183239562	chr4:10272720-10272721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs187740424	chr4:10272731-10272732	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs549908052	chr4:10272753-10272754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs569269374	chr4:10272767-10272768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs556680467	chr4:10272770-10272771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs576227817	chr4:10272772-10272773	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs551395440	chr4:10272778-10272779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs10489073	chr4:10272788-10272789	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
47	rs190648438	chr4:10272794-10272795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs549269091	chr4:10272810-10272811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs573819931	chr4:10272819-10272820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs138323414	chr4:10272832-10272833	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:52)

Disease	PMID	Source
Colorectal cancer	16272173	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17603634	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Prostate cancer	18632612	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	21509527	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Schizophrenia	22241247	CNVD
Autosomal-dominant microtia	18179897	CNVD
Glioma	17123091	CNVD
Colorectal cancer	20459617	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Neuroblastoma	20406844	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:10262000-10273800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:10267000-10273600	Weak transcription	Fetal Thymus	thymus
3	chr4:10268800-10273600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:10269000-10273800	Weak transcription	HMEC	breast
5	chr4:10269200-10274600	Weak transcription	NHEK	skin
6	chr4:10269400-10274000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:10271400-10272200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:10271800-10277600	Weak transcription	K562	blood
9	chr4:10272200-10274000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:10273400-10274600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:10273600-10274400	Enhancers	Thymus	Thymus
12	chr4:10273600-10275200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:10273600-10275200	Enhancers	Fetal Thymus	thymus
14	chr4:10273800-10275000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:10273800-10275200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:10273800-10275400	Enhancers	HMEC	breast
17	chr4:10274000-10274400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:10274000-10274400	Enhancers	HSMM	muscle
19	chr4:10274000-10274600	Enhancers	HSMMtube	muscle
20	chr4:10274000-10274800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:10274000-10275200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:10274200-10274800	Enhancers	Osteobl	bone
23	chr4:10274400-10277600	Weak transcription	HSMM	muscle
24	chr4:10274600-10275200	Enhancers	NHEK	skin
25	chr4:10274600-10277200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:10274600-10277200	Weak transcription	HSMMtube	muscle
27	chr4:10274800-10277200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:10275000-10277400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr4:10275200-10277400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:10275200-10279200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr4:10275200-10279600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr4:10275200-10279800	Weak transcription	NHEK	skin
33	chr4:10275400-10277400	Weak transcription	HMEC	breast

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