Variant report

Variant	esv2756103
Chromosome Location	chr9:43530395-44466984
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3813)
CpG islands
(count:977)
Chromatin interactive
region (count:1)
LncRNA
region (count:35)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3813 , 50 per page) page: 1 2 3 4 5 6 7 ... 77

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:44108136-44108696	HepG2	liver:	n/a	n/a
2	ARID3A	chr9:44118677-44118886	HepG2	liver:	n/a	n/a
3	ATF1	chr9:43939526-43939892	K562	blood:	n/a	n/a
4	ATF3	chr9:43939586-43939712	K562	blood:	n/a	n/a
5	BACH1	chr9:44227184-44227631	H1-hESC	embryonic stem cell:	n/a	n/a
6	BACH1	chr9:43686226-43686817	H1-hESC	embryonic stem cell:	n/a	n/a
7	BACH1	chr9:44227257-44227630	K562	blood:	n/a	n/a
8	BATF	chr9:44245139-44246113	GM12878	blood:	n/a	n/a
9	BATF	chr9:44065378-44065708	GM12878	blood:	n/a	n/a
10	BATF	chr9:44292256-44292632	GM12878	blood:	n/a	n/a
11	BATF	chr9:44070573-44070887	GM12878	blood:	n/a	n/a
12	BATF	chr9:43844088-43844411	GM12878	blood:	n/a	n/a
13	BATF	chr9:44125333-44125599	GM12878	blood:	n/a	n/a
14	BATF	chr9:44341525-44341789	GM12878	blood:	n/a	chr9:44341638-44341649
15	BATF	chr9:44306098-44306362	GM12878	blood:	n/a	n/a
16	BATF	chr9:44306115-44306341	GM12878	blood:	n/a	n/a
17	BATF	chr9:44435839-44436055	GM12878	blood:	n/a	n/a
18	BATF	chr9:44367161-44367437	GM12878	blood:	n/a	n/a
19	BATF	chr9:44341546-44341772	GM12878	blood:	n/a	chr9:44341638-44341649
20	BATF	chr9:44124132-44124352	GM12878	blood:	n/a	n/a
21	BATF	chr9:44030553-44030791	GM12878	blood:	n/a	n/a
22	BATF	chr9:43925013-43925176	GM12878	blood:	n/a	n/a
23	BATF	chr9:44086306-44086516	GM12878	blood:	n/a	n/a
24	BATF	chr9:44082194-44082452	GM12878	blood:	n/a	n/a
25	BATF	chr9:44212515-44212942	GM12878	blood:	n/a	chr9:44212712-44212723
26	BATF	chr9:44401104-44402763	GM12878	blood:	n/a	n/a
27	BATF	chr9:44030053-44030338	GM12878	blood:	n/a	n/a
28	BATF	chr9:44076866-44077089	GM12878	blood:	n/a	n/a
29	BATF	chr9:44243686-44243967	GM12878	blood:	n/a	n/a
30	BATF	chr9:44245375-44245745	GM12878	blood:	n/a	n/a
31	BATF	chr9:44086267-44086535	GM12878	blood:	n/a	n/a
32	BATF	chr9:44280452-44280759	GM12878	blood:	n/a	n/a
33	BATF	chr9:44402875-44403302	GM12878	blood:	n/a	n/a
34	BATF	chr9:44012526-44012769	GM12878	blood:	n/a	n/a
35	BATF	chr9:44212521-44212907	GM12878	blood:	n/a	chr9:44212712-44212723
36	BATF	chr9:44105673-44105873	GM12878	blood:	n/a	n/a
37	BATF	chr9:44379817-44379994	GM12878	blood:	n/a	chr9:44379913-44379924
38	BATF	chr9:44088871-44089267	GM12878	blood:	n/a	chr9:44088983-44088991
39	BATF	chr9:44340761-44341046	GM12878	blood:	n/a	n/a
40	BATF	chr9:44100518-44100936	GM12878	blood:	n/a	chr9:44100637-44100647
41	BATF	chr9:44054788-44055026	GM12878	blood:	n/a	n/a
42	BATF	chr9:44305341-44305592	GM12878	blood:	n/a	n/a
43	BATF	chr9:44125369-44125590	GM12878	blood:	n/a	n/a
44	BATF	chr9:44176537-44176725	GM12878	blood:	n/a	n/a
45	BATF	chr9:44110679-44110958	GM12878	blood:	n/a	n/a
46	BATF	chr9:44355328-44355568	GM12878	blood:	n/a	n/a
47	BATF	chr9:44367127-44367454	GM12878	blood:	n/a	n/a
48	BATF	chr9:44403838-44404118	GM12878	blood:	n/a	n/a
49	BATF	chr9:44110695-44110955	GM12878	blood:	n/a	n/a
50	BATF	chr9:44030517-44030875	GM12878	blood:	n/a	n/a

(count:977 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:44118915-44118965	PrEC	prostate:	n/a
2	chr9:44118915-44118965	PrEC	prostate:	n/a
3	chr9:44420179-44420229	HPAEpiC	pulmonary alveolar:	n/a
4	chr9:43860027-43860077	Hela-S3	cervix:	n/a
5	chr9:43860965-43861015	HNPCEpiC	eye:	n/a
6	chr9:44118236-44118286	SK-N-MC	brain:	n/a
7	chr9:44118236-44118286	NT2-D1	testis:	n/a
8	chr9:43860027-43860077	HMEC	breast:	n/a
9	chr9:44120147-44120197	GM12891	blood:	n/a
10	chr9:44401998-44402048	HL-60	blood:	n/a
11	chr9:44422602-44422652	ProgFib	skin:	n/a
12	chr9:43631161-43631211	AG09309	skin:	n/a
13	chr9:43860027-43860077	IMR90	lung:	fetal
14	chr9:43860027-43860077	NB4	blood:	n/a
15	chr9:44118915-44118965	A549	lung:	n/a
16	chr9:44119413-44119463	ProgFib	skin:	n/a
17	chr9:44422602-44422652	HAEpiC	amniotic membrane:	n/a
18	chr9:44401998-44402048	AG09309	skin:	n/a
19	chr9:43631161-43631211	PANC-1	pancreas:	n/a
20	chr9:43631161-43631211	LNCaP	prostate:	n/a
21	chr9:44227339-44227389	HEK293	kidney:	embryo
22	chr9:44227339-44227389	Hela-S3	cervix:	n/a
23	chr9:43915234-43915284	Jurkat	blood:	n/a
24	chr9:44120147-44120197	NT2-D1	testis:	n/a
25	chr9:44118236-44118286	PFSK-1	brain:	n/a
26	chr9:43915234-43915284	HIPEpiC	eye:	n/a
27	chr9:44227210-44227260	Caco-2	colon:	n/a
28	chr9:43860965-43861015	K562	blood:	n/a
29	chr9:44119823-44119873	GM19239	blood:	n/a
30	chr9:44119823-44119873	SK-N-SH	brain:	n/a
31	chr9:44120147-44120197	HCF	heart:	n/a
32	chr9:44118014-44118064	BJ	skin:	n/a
33	chr9:44118014-44118064	GM06990	blood:	n/a
34	chr9:44420179-44420229	HCT-116	colon:	n/a
35	chr9:43915234-43915284	AG09319	gingival:	n/a
36	chr9:44119413-44119463	LNCaP	prostate:	n/a
37	chr9:44401998-44402048	AG09319	gingival:	n/a
38	chr9:44118014-44118064	MCF-7	breast:	n/a
39	chr9:44313114-44313164	HCT-116	colon:	n/a
40	chr9:44401998-44402048	BJ	skin:	n/a
41	chr9:44227339-44227389	SAEC	small airway:	n/a
42	chr9:44227210-44227260	SKMC	muscle:	n/a
43	chr9:44422602-44422652	NT2-D1	testis:	n/a
44	chr9:44118014-44118064	K562	blood:	n/a
45	chr9:44313114-44313164	Jurkat	blood:	n/a
46	chr9:44119823-44119873	ProgFib	skin:	n/a
47	chr9:43860965-43861015	SK-N-MC	brain:	n/a
48	chr9:44313114-44313164	ovcar-3	ovarian:	n/a
49	chr9:44401998-44402048	ECC-1	luminal epithelium:	n/a
50	chr9:44420179-44420229	AG04450	lung:	fetal

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:107699957..107700478-chr9:44227430..44227950,2	MCF-7	breast:

(count:35 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CNTNAP3B-2	chr9:43617727-43618056	NONHSAT131361
2	lnc-FAM75A6-3	chr9:44256189-44256817	ENSG00000233424
3	lnc-RP11-160N1.10.1-8	chr9:43853497-43853563	NONHSAT131364
4	lnc-RP11-160N1.10.1-8	chr9:43861003-43861206	NONHSAT131364
5	lnc-ANKRD20A3-13	chr9:43629020-43629117	NONHSAT131362
6	lnc-CNTNAP3B-1	chr9:44384585-44387483	ENSG00000229311
7	lnc-ANKRD20A3-13	chr9:43627769-43628378	NONHSAT131362
8	lnc-CNTNAP3B-3	chr9:44011053-44011839	NONHSAT131369
9	lnc-FAM75A6-3	chr9:44256580-44256817	ENSG00000233424.2
10	lnc-FAM75A6-2	chr9:44182692-44183417	XLOC_007697
11	lnc-FAM75A6-5	chr9:43802781-43803039	NONHSAT131363
12	lnc-FAM75A6-1	chr9:44136621-44137011	XLOC_007696
13	lnc-FAM75A6-6	chr9:43830636-43831108	NONHSAT131365
14	lnc-FAM75A6-3	chr9:44260052-44260139	ENSG00000233424.2
15	lnc-ANKRD20A3-13	chr9:43628634-43628694	NONHSAT131362
16	lnc-FAM75A6-2	chr9:44181550-44181732	XLOC_007697
17	lnc-CNTNAP3B-1	chr9:44391077-44391705	ENSG00000229311
18	lnc-CNTNAP3B-1	chr9:44391077-44391416	NR_046203
19	lnc-FAM75A6-3	chr9:44260422-44263319	ENSG00000233424.2
20	lnc-RP11-160N1.10.1-8	chr9:43828157-43828221	NONHSAT131364
21	lnc-FAM75A6-6	chr9:43833702-43835037	NONHSAT131365
22	lnc-RP11-160N1.10.1-2	chr9:44402460-44402515	ENSG00000237357
23	lnc-FAM75A6-7	chr9:44046989-44047817	NONHSAT131371
24	lnc-CNTNAP3B-1	chr9:44387768-44387853	NR_046203
25	lnc-RP11-160N1.10.1-8	chr9:43822729-43822779	NONHSAT131364
26	lnc-CNTNAP3B-1	chr9:44387768-44387853	ENSG00000229311
27	lnc-FAM75A6-3	chr9:44260422-44263319	ENSG00000233424
28	lnc-FAM75A6-1	chr9:44144869-44145101	XLOC_007696
29	lnc-FAM75A6-3	chr9:44260052-44260139	ENSG00000233424
30	lnc-RP11-160N1.10.1-8	chr9:43822613-43822699	NONHSAT131364
31	lnc-FAM75A6-8	chr9:44075932-44076173	NONHSAT131372
32	lnc-CNTNAP3B-1	chr9:44387387-44387483	NR_046203
33	lnc-RP11-160N1.10.1-8	chr9:43844144-43844200	NONHSAT131364
34	lnc-RP11-160N1.10.1-8	chr9:43875989-43876034	NONHSAT131364
35	lnc-RP11-160N1.10.1-2	chr9:44403060-44403260	ENSG00000237357

No data

Variant related genes	Relation type
ENSG00000230245	TF binding region
ENSG00000237207	TF binding region
ENSG00000229079	TF binding region
MEP1AP4	TF binding region
ENSG00000239986	TF binding region
CYP4F60P	TF binding region
ENSG00000170165	TF binding region
ENSG00000216829	TF binding region
ENSG00000268708	TF binding region
ENSG00000270909	TF binding region
ENSG00000212952	TF binding region
SPATA31A6	TF binding region
ANKRD20A7P	TF binding region
RN7SL343P	TF binding region
ENSG00000204818	TF binding region
ENSG00000237357	TF binding region
ENSG00000204816	TF binding region
ENSG00000233424	TF binding region
ENSG00000229311	TF binding region
SNX18P5	TF binding region
RNU6-599P	TF binding region
CNN2P4	TF binding region
CNTNAP3B	TF binding region
ENSG00000230245	CpG island
ENSG00000237207	CpG island
ENSG00000229079	CpG island
MEP1AP4	CpG island
ENSG00000239986	CpG island
CYP4F60P	CpG island
ENSG00000170165	CpG island
ENSG00000216829	CpG island
ENSG00000268708	CpG island
ENSG00000270909	CpG island
ENSG00000212952	CpG island
SPATA31A6	CpG island
ANKRD20A7P	CpG island
RN7SL343P	CpG island
ENSG00000204818	CpG island
ENSG00000237357	CpG island
ENSG00000204816	CpG island
ENSG00000233424	CpG island
ENSG00000229311	CpG island
SNX18P5	CpG island
RNU6-599P	CpG island
CNN2P4	CpG island
CNTNAP3B	CpG island
ZBTB39	miRNA target sites

Extended variants
information (count: 8941 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:8941 , 50 per page) page: 1 2 3 4 5 6 7 ... 179

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs200649728	chr9:43581000-43581001	Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs61048950	chr9:43581025-43581026	Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs199525705	chr9:43581062-43581063	Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs3122026	chr9:43581073-43581074	Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs558117093	chr9:43581103-43581104	Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs2605781	chr9:43581145-43581146	Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs142811630	chr9:43581166-43581167	Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs533981733	chr9:43581168-43581169	Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs555563205	chr9:43581171-43581172	Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs574069894	chr9:43581177-43581178	Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs59739002	chr9:43581184-43581185	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs562820422	chr9:43581186-43581187	Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs60959073	chr9:43581216-43581217	Enhancers Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs144597671	chr9:43581228-43581229	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs560496233	chr9:43581237-43581238	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
16	rs539833483	chr9:43581244-43581245	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs10441809	chr9:43581253-43581254	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs549175098	chr9:43581261-43581262	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs139262556	chr9:43581298-43581299	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs528998841	chr9:43581325-43581326	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs550676702	chr9:43581341-43581342	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs568841285	chr9:43581350-43581351	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs150002482	chr9:43581363-43581364	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs551351118	chr9:43581430-43581431	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs2260619	chr9:43581432-43581433	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs566785109	chr9:43581436-43581437	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs534049083	chr9:43581441-43581442	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs1971917	chr9:43581449-43581450	Enhancers Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs555294415	chr9:43581474-43581475	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs567482600	chr9:43581510-43581511	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs563743517	chr9:43581516-43581517	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs537630024	chr9:43581533-43581534	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs556660253	chr9:43581543-43581544	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs578030281	chr9:43581569-43581570	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs141327598	chr9:43581571-43581572	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs553710134	chr9:43581630-43581631	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs2445518	chr9:43581662-43581663	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs143841636	chr9:43581679-43581680	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs189455222	chr9:43581680-43581681	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs1971918	chr9:43581683-43581684	Enhancers Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs531964389	chr9:43581684-43581685	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs2445519	chr9:43581687-43581688	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs543643234	chr9:43581724-43581725	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs368144945	chr9:43581749-43581750	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs192790275	chr9:43581750-43581751	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs140731426	chr9:43581765-43581766	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs551414477	chr9:43581774-43581775	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs62556202	chr9:43581798-43581799	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs2491562	chr9:43581799-43581800	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs143435917	chr9:43581835-43581836	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Oral cancer	21386901	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21509527	CNVD
Sezary syndrome	18413736	CNVD
Breast cancer	20409316	CNVD
early-passage human iPS cells	21368824	CNVD
Schizophrenia	21346763	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	21990379	CNVD
Astrocytoma	22246337	CNVD
Lung adenocarcinoma	17086460	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Lung cancer	17086460	CNVD
Rhabdomyosarcoma	16790082	CNVD
Schizophrenia	20967226	CNVD
Schizophrenia	23813976	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:640 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:43581000-43583400	Active TSS	A549	lung
2	chr9:43581200-43581600	Enhancers	HUVEC	blood vessel
3	chr9:43581200-43582200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr9:43581600-43582800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:43582200-43582600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:43582400-43582800	Enhancers	Fetal Brain Male	brain
7	chr9:43582600-43583000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:43588400-43589000	Enhancers	HUVEC	blood vessel
9	chr9:43589000-43590200	Weak transcription	HUVEC	blood vessel
10	chr9:43590200-43590800	Enhancers	HUVEC	blood vessel
11	chr9:43590800-43593800	Weak transcription	HUVEC	blood vessel
12	chr9:43593800-43595000	Enhancers	HUVEC	blood vessel
13	chr9:43594200-43594600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:43594200-43595000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:43609400-43609800	Enhancers	HUVEC	blood vessel
16	chr9:43684200-43685200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:43684200-43685200	Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr9:43684200-43685200	Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr9:43684200-43685200	Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr9:43684200-43685200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:43684200-43685200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr9:43684200-43685200	Active TSS	Fetal Brain Female	brain
23	chr9:43684200-43686200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:43684200-43686400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:43684200-43687000	Active TSS	Right Ventricle	heart
26	chr9:43684200-43687000	Active TSS	A549	lung
27	chr9:43684200-43687200	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr9:43684400-43685200	Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr9:43684400-43685200	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr9:43684800-43685000	Active TSS	Colonic Mucosa	Colon
31	chr9:43684800-43685200	Active TSS	H1 Cell Line	embryonic stem cell
32	chr9:43684800-43685200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr9:43684800-43685200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr9:43684800-43685200	Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr9:43684800-43685200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:43684800-43685200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr9:43684800-43685200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr9:43684800-43685200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr9:43684800-43685200	Active TSS	Adipose Nuclei	Adipose
40	chr9:43684800-43685200	Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr9:43684800-43685200	Active TSS	Psoas Muscle	Psoas
42	chr9:43684800-43685200	Active TSS	Osteobl	bone
43	chr9:43684800-43686400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr9:43684800-43686800	Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr9:43684800-43687000	Active TSS	Stomach Smooth Muscle	stomach
46	chr9:43684800-43687200	Active TSS	HMEC	breast
47	chr9:43684800-43687200	Active TSS	HUVEC	blood vessel
48	chr9:43685000-43685200	Bivalent/Poised TSS	Colonic Mucosa	Colon
49	chr9:43685200-43686000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr9:43685200-43686000	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links