Variant report

Variant	esv2756294
Chromosome Location	chr10:110718705-110778737
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:19)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:110778372..110779316-chr10:111186907..111187555,2	MCF-7	breast:
2	chr10:110778371..110779098-chr10:111625911..111626776,3	MCF-7	breast:

(count:19 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ADD3-2	chr10:110733751-110733926	XLOC_008609
2	lnc-ADD3-10	chr10:110721110-110721237	l_372_chr10:110721109-110768632_testes
3	lnc-ADD3-10	chr10:110738577-110738678	l_372_chr10:110721109-110768632_testes
4	lnc-ADD3-2	chr10:110731207-110731247	XLOC_008609
5	lnc-ADD3-10	chr10:110749872-110749959	l_372_chr10:110721109-110768632_testes
6	lnc-ADD3-2	chr10:110734846-110734932	XLOC_008609
7	lnc-ADD3-10	chr10:110768418-110768632	l_372_chr10:110721109-110768632_testes
8	lnc-ADD3-2	chr10:110731207-110731247	XLOC_008609
9	lnc-ADD3-2	chr10:110734846-110734932	XLOC_008609
10	lnc-ADD3-1	chr10:110759920-110759969	XLOC_008610
11	lnc-ADD3-2	chr10:110731194-110731247	XLOC_008609
12	lnc-ADD3-2	chr10:110734846-110734932	XLOC_008609
13	lnc-ADD3-2	chr10:110733751-110733926	XLOC_008609
14	lnc-ADD3-2	chr10:110733751-110733926	XLOC_008609
15	lnc-ADD3-2	chr10:110759882-110759905	XLOC_008609
16	lnc-ADD3-10	chr10:110724836-110724922	l_372_chr10:110721109-110768632_testes
17	lnc-ADD3-10	chr10:110723741-110723916	l_372_chr10:110721109-110768632_testes
18	lnc-ADD3-1	chr10:110778428-110778745	XLOC_008610
19	lnc-ADD3-2	chr10:110748587-110748683	XLOC_008609

No data

Variant related genes	Relation type
CHEK1	miRNA target sites
RNF111	miRNA target sites
BIRC5	miRNA target sites
CCL25	miRNA target sites
KANK1	miRNA target sites
STAG2	miRNA target sites
CHIC2	miRNA target sites
IRAK2	miRNA target sites
RNF125	miRNA target sites
RNF138	miRNA target sites
STAM2	miRNA target sites

Extended variants
information (count: 625 )
Associated
traits (count: 72 )

Variant overlapped rSNPs/rCNVs (count:625 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs561319347	chr10:110721174-110721175	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs367949240	chr10:110721234-110721235	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs368722088	chr10:110723791-110723792	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs559169849	chr10:110723820-110723821	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs146971949	chr10:110723889-110723890	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs7905093	chr10:110723902-110723903	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs17700780	chr10:110723904-110723905	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs181334306	chr10:110724837-110724838	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs574212637	chr10:110724885-110724886	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs184287307	chr10:110724908-110724909	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs559462273	chr10:110724913-110724914	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs573186386	chr10:110725411-110725412	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs182076718	chr10:110725446-110725447	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs17125506	chr10:110725459-110725460	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs530978878	chr10:110725460-110725461	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs544440240	chr10:110725470-110725471	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs527480012	chr10:110725490-110725491	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs186843364	chr10:110725514-110725515	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs146430741	chr10:110725522-110725523	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs148610190	chr10:110725550-110725551	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs566753539	chr10:110725578-110725579	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs375274375	chr10:110725599-110725600	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs143502830	chr10:110725601-110725602	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs12218342	chr10:110725624-110725625	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs551712973	chr10:110725662-110725663	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs568615819	chr10:110725667-110725668	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs550140836	chr10:110725688-110725689	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs191279555	chr10:110725690-110725691	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs73350606	chr10:110725697-110725698	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs372973504	chr10:110725710-110725711	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs567800221	chr10:110725762-110725763	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs536832575	chr10:110725784-110725785	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs35169566	chr10:110725793-110725794	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs553437006	chr10:110725829-110725830	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs113523501	chr10:110725833-110725834	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs151170882	chr10:110725857-110725858	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs140167714	chr10:110725858-110725859	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs118087186	chr10:110725901-110725902	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs565464453	chr10:110725961-110725962	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs183040109	chr10:110725984-110725985	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs146988263	chr10:110725993-110725994	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs561412013	chr10:110726022-110726023	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs574590125	chr10:110726030-110726031	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs115258900	chr10:110726080-110726081	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs11814470	chr10:110726111-110726112	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs11194319	chr10:110726138-110726139	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs549767629	chr10:110726173-110726174	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs10644497	chr10:110726174-110726175	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs147611157	chr10:110726181-110726182	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs536548147	chr10:110726183-110726184	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:72)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
renal hypoplasia	20603712	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Myxofibrosarcoma	16751306	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Multiple myeloma	16616336	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21364760	CNVD
Barrett''s syndrome	19417022	CNVD
Sezary syndrome	18413736	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110725400-110726400	Enhancers	Fetal Brain Female	brain
2	chr10:110725400-110727400	Enhancers	Fetal Brain Male	brain
3	chr10:110725600-110726400	Enhancers	Brain Germinal Matrix	brain
4	chr10:110726400-110727800	Weak transcription	Fetal Brain Female	brain
5	chr10:110727800-110728600	Enhancers	Fetal Brain Female	brain
6	chr10:110733600-110733800	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr10:110735400-110736000	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr10:110741600-110742000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr10:110741600-110742000	Enhancers	Fetal Stomach	stomach
10	chr10:110741600-110742200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr10:110741600-110742600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr10:110741800-110742200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr10:110742000-110742400	Weak transcription	Fetal Stomach	stomach
14	chr10:110742400-110742600	Enhancers	Fetal Stomach	stomach
15	chr10:110742600-110744600	Weak transcription	Fetal Stomach	stomach
16	chr10:110744600-110747200	Enhancers	Fetal Stomach	stomach
17	chr10:110745000-110745200	Enhancers	Rectal Smooth Muscle	rectum
18	chr10:110745800-110746000	Enhancers	Rectal Smooth Muscle	rectum
19	chr10:110746200-110747000	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr10:110746200-110747400	Enhancers	HSMMtube	muscle
21	chr10:110747000-110747200	Enhancers	Fetal Brain Male	brain
22	chr10:110747200-110749200	Weak transcription	Fetal Stomach	stomach
23	chr10:110747400-110748600	Weak transcription	Fetal Brain Male	brain
24	chr10:110748600-110750400	Enhancers	Fetal Brain Male	brain
25	chr10:110749200-110750400	Enhancers	Fetal Stomach	stomach
26	chr10:110749400-110749600	Enhancers	Fetal Lung	lung
27	chr10:110749400-110750400	Enhancers	Fetal Brain Female	brain
28	chr10:110749600-110750200	Enhancers	Colon Smooth Muscle	Colon
29	chr10:110749600-110750400	Enhancers	Brain Germinal Matrix	brain
30	chr10:110750200-110750400	Enhancers	Fetal Lung	lung
31	chr10:110778400-110779200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:110778400-110779400	Enhancers	Adipose Nuclei	Adipose

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